coevo

A library of tools and scripts for preprocessing sequence and structure files for coevolutionary analyses.

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See SEQUENCE_FORMATTING and MAPPING_AND_DISTANCES for example usage.

Install

pip install git+https://github.com/aavilahe/coevo_analysis_pypackage.git@dev

Scripts in bin/

convert_resnums_to_columns.py
fasta_to_phy.py
fasta_to_psicov.py
get_dists.py
join_fastas.py
make_attributes.py
map_column_to_resnum.py
min_dists.py
split_faa_on_col.py

Previously, this package provided support for postprocessing output from various coevolution programs. This functionallity is deprecated and will be moved to a separate package in the future.