Code/scripts for the analysis of MPNST related datasets
-- Paper: Veena Kochat*, AT Raman* et al., Acta Neuropathologica (2021)
-- Dataset: GSE141439. The GEO repository consists of all the fastq and processed files such as raw fastq (sequence files), raw counts table, list of differentially expressed genes (output from DESeq2) and bigWig/peak files (for IGV visualization).
-- Here is the pipeline for the analysis of ChIPseq dataset (developed by Ming Tang)