This Anki add-on allows you to import only scheduling information from an apkg file.
It can be accessed from Tools > Import scheduling info from deck package.
Importing from apkg files using the new compression format in 2.1.50+ is supported for 2.1.50+.
You can download the add-on from AnkiWeb: 7411103.
Note: This add-on is currently in beta and hasn't received much testing yet. Please report any issues you encounter.