scATOMIC v2.0.3

addressed github issue #14 now library scATOMIC loads all required functions and dependencies

scATOMIC v2.0.2

Fixed bug in create_summary_matrix() for low quality cells.

scATOMIC v2.0.1

Fixed code to allow for R >4.3 compatibility

scATOMIC v2.0.0

• We have updated scATOMIC to classify additional subclasses of cells. Specifically, subtypes of macrophages, monocytes, cDCs and cancer associated fibroblasts are now included by default.

• We have added the normal_tissue parameter in the create_summary_matrix when inputted samples represent non-cancer, in this case any cancer cell label is converted to normal tissue cell. See this new vignette

• We have added the known_cancer_type parameter in the create_summary_matrix when the cancer type is already known. In this case any cancer cell label is converted to the known cancer type. See this new vignette

• We have added a low resolution mode to output broader subtypes of non malignant cells.

• We have switched to using a fork of the cutoff package called cutoff.scATOMIC to avoid conflicting package names with the CRAN cutoff package.

scATOMIC v1.1.0

v.1.1.0

adding sample confidence