Releases: abelson-lab/scATOMIC
scATOMIC v2.0.3
scATOMIC v2.0.2
Fixed bug in create_summary_matrix() for low quality cells.
scATOMIC v2.0.1
Fixed code to allow for R >4.3 compatibility
scATOMIC v2.0.0
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We have updated scATOMIC to classify additional subclasses of cells. Specifically, subtypes of macrophages, monocytes, cDCs and cancer associated fibroblasts are now included by default.
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We have added the normal_tissue parameter in the create_summary_matrix when inputted samples represent non-cancer, in this case any cancer cell label is converted to normal tissue cell. See this new vignette
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We have added the known_cancer_type parameter in the create_summary_matrix when the cancer type is already known. In this case any cancer cell label is converted to the known cancer type. See this new vignette
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We have added a low resolution mode to output broader subtypes of non malignant cells.
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We have switched to using a fork of the cutoff package called cutoff.scATOMIC to avoid conflicting package names with the CRAN cutoff package.
scATOMIC v1.1.0
v.1.1.0 adding sample confidence