ca_utils: minor fix in split minimap2 alignments for IDY consistency …

…with and w/o split
ablab · Apr 29, 2020 · ad7358d · ad7358d
1 parent 87721c3
commit ad7358d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/quast_libs/ca_utils/align_contigs.py b/quast_libs/ca_utils/align_contigs.py
@@ -153,7 +153,7 @@ def _write_align():
             return
         align.e1 = align.s1 + align.len1 - 1
         align.e2 = align.s2 + (align.len2 - 1) * strand_direction
-        align.idy = '%.2f' % (matched_bases * 100.0 / align.len1)
+        align.idy = '%.2f' % (matched_bases * 100.0 / max(align.len1, align.len2))
         if float(align.idy) >= qconfig.min_IDY:
             coords_file.write(align.coords_str() + '\n')