Docs: fixed hyphens in CHANGES.txt

CHANGES.txt

@@ -25,48 +25,48 @@
          specified with "--k-mer-size" option.
 
       4. Improved and extended gene prediction/annotation functionality:
-       — Barrnap for rRNA genes prediction ("--rna-finding") is added;
-       — BUSCO for finding conserved single-copy orthologs ("--conserved-genes-finding";
+       - Barrnap for rRNA genes prediction ("--rna-finding") is added;
+       - BUSCO for finding conserved single-copy orthologs ("--conserved-genes-finding";
          Linux only) is added;
-       — regular predicted genes (using GeneMark or Glimmer) are split into full and partial;
-       — "--fungus" option is added for more accurate processing of fungus assemblies using
+       - regular predicted genes (using GeneMark or Glimmer) are split into full and partial;
+       - "--fungus" option is added for more accurate processing of fungus assemblies using
          GeneMark-ES and BUSCO;
-       — "--features" option is added to replace "-G/--genes", it allows to count all genomic
+       - "--features" option is added to replace "-G/--genes", it allows to count all genomic
          features from GFF or any specific feature type (e.g., 'CDS').
 
       5. Icarus updates:
-       — changes in alignment viewers:
+       - changes in alignment viewers:
            * GC% track is added to the read coverage pane;
            * a button for highlighting all assembly misassemblies is added;
            * local misassemblies are now unchecked (hidden) by default.
-       — static Circos plot of alignments ("--circos") is added;
-       — chromosome names in the main menu are sorted in the human-friendly order now
+       - static Circos plot of alignments ("--circos") is added;
+       - chromosome names in the main menu are sorted in the human-friendly order now
          (e.g., chr1, chr2, ..., chr10 instead of chr1, chr10, chr2, ...).
 
       6. Improved reads support:
-       — reads are now mapped to all assemblies and various alignment stats are reported;
-       — single ("--single") and interlaced ("--12") reads are supported;
-       — multiple read libraries are supported, including both paired-end ("--pe1/2/12")
+       - reads are now mapped to all assemblies and various alignment stats are reported;
+       - single ("--single") and interlaced ("--12") reads are supported;
+       - multiple read libraries are supported, including both paired-end ("--pe1/2/12")
          and mate-pair ("--mp1/2/12") libraries;
-       — Oxford Nanopores ("--nanopore") and PacBio SMRT ("--pacbio") are supported;
-       — ready SAM and BAM files can be provided both for reads mapped against assemblies
+       - Oxford Nanopores ("--nanopore") and PacBio SMRT ("--pacbio") are supported;
+       - ready SAM and BAM files can be provided both for reads mapped against assemblies
          ("--sam/bam") and reads mapped against the reference genome ("--ref-sam/bam");
        - reads stats can still be skipped by using "--no-read-stats" option.
 
       7. Modified processing of undefined nucleotides ('N'):
-       — reference Ns are excluded from Genome Fraction computation (100% if all ACGT bases
+       - reference Ns are excluded from Genome Fraction computation (100% if all ACGT bases
          are covered);
-       — assembly Ns are excluded from "Unaligned" and "partially unaligned length"
+       - assembly Ns are excluded from "Unaligned" and "partially unaligned length"
          computation;
-       — scaffold gaps are now defined as simply a gap between alignments having at least 10
+       - scaffold gaps are now defined as simply a gap between alignments having at least 10
          consecutive Ns (affects "# scaffold gap size mis.", previously it was underestimated
          due to a strict threshold on the percentage of Ns in the gap sequence).
 
       8. MetaQUAST changes:
-       — trying to download next best match if a reference genome is not found in NCBI
+       - trying to download next best match if a reference genome is not found in NCBI
          (without references mode only);
        - link to the combined reference report is added to the main report HTML;
-       — sample summary reports (TXT, TEX, etc) are renamed to exclude special characters in
+       - sample summary reports (TXT, TEX, etc) are renamed to exclude special characters in
          the filenames ('#', '%', etc).
 
       9. Changes and new metrics related to scaffold gap size misassemblies:
@@ -84,9 +84,9 @@
          misassembly-related metrics).
 
       11. Changes in the list of embedded third-party tools:
-       — removed: GAGE, gnuplot;
-       — replaced: MUMmer and E-MEM (new: Minimap2), Manta (new: GRIDSS);
-       — added: BUSCO, Barrnap, KMC, Red.
+       - removed: GAGE, gnuplot;
+       - replaced: MUMmer and E-MEM (new: Minimap2), Manta (new: GRIDSS);
+       - added: BUSCO, Barrnap, KMC, Red.
 
       12. Fixed several minor bugs.