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QUAST 5.1.0rc1

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@alexeigurevich alexeigurevich released this 29 Apr 18:49
· 4 commits to release_5.1.0 since this release
quast_5.1.0rc1
6260eff

This is a pre-release of the upcoming v.5.1.0. All changes are here. Detailed release notes are here (this kind of document is created for the first time in the QUAST release history!)

The most notable features/changes:

  • New option --reuse-combined-alignments (MetaQUAST only) for reusing alignments against the combined_reference in the subsequent runs_per_reference analysis stages
  • Other changes in MetaQUAST pipeline: improved no-ref mode, default min IDY set to 90%
  • New option --x-for-Nx for reporting Nx, Lx, etc metrics for a specific value of x in addition to N50, L50, etc. The default value is 90. The previous non-changeable default was 75
  • Updates in embedded tools -- SILVA (v138 now), BUSCO (fixed links to v3/odb9), GeneMark (updated licenses)
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