path class

ablab · Sep 10, 2012 · e99c16a · e99c16a
1 parent e1127ba
commit e99c16a
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Showing 7 changed files with 721 additions and 303 deletions.
diff --git a/assembler/src/debruijn/long_contigs/lc_common.hpp b/assembler/src/debruijn/long_contigs/lc_common.hpp
@@ -313,6 +313,8 @@ void PrintPathLengthStats(const Graph& g, std::vector<BidirectionalPath>& paths)
 	}
 }
 
+
+
 //Prints coverage of all edges by given paths and total edge coverage
 double PrintPathCoverage(const Graph& g, std::vector<BidirectionalPath>& paths) {
 	std::multiset<EdgeId> covered;
@@ -323,6 +325,12 @@ double PrintPathCoverage(const Graph& g, std::vector<BidirectionalPath>& paths)
 		}
 	}
 
+	DEBUG("EDGE STAT")
+	for (auto iter = covered.begin(); iter != covered.end(); ++iter) {
+	    DEBUG(g.int_id(*iter) << " (" << g.length(*iter) << ") = " << covered.count(*iter));
+
+	}
+
 	std::map<size_t, size_t> coveredTimes;
 	size_t edgeCount = 0;
 	for (auto iter = g.SmartEdgeBegin(); !iter.IsEnd(); ++iter) {

diff --git a/assembler/src/debruijn/long_contigs/new/bidirectional_path.cpp b/assembler/src/debruijn/long_contigs/new/bidirectional_path.cpp
diff --git a/assembler/src/debruijn/long_contigs/new/bidirectional_path.h b/assembler/src/debruijn/long_contigs/new/bidirectional_path.h