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I am trying to do genome assembl (bacteria) using Illumina paired-end sequencing reads. Out of around 40 datasets, only one of them didn't finish and gave me an error (error code -10 -- also see attached file). I don't think this is an issue with the memory since it didn't take more than 4 Gb of memory (8 Gb available on the machine). I've tried running spades with/out 'careful' option and tried using "--continue" option several times as suggested in another post without success.
If anybody has any thoughts on this, please let me know. I've attached spades.log and params.txt files.
Hi,
I am trying to do genome assembl (bacteria) using Illumina paired-end sequencing reads. Out of around 40 datasets, only one of them didn't finish and gave me an error (error code -10 -- also see attached file). I don't think this is an issue with the memory since it didn't take more than 4 Gb of memory (8 Gb available on the machine). I've tried running spades with/out 'careful' option and tried using "--continue" option several times as suggested in another post without success.
If anybody has any thoughts on this, please let me know. I've attached spades.log and params.txt files.
Cheers,
Irnov
spades.log
params.txt
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