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update to wishlist for future functionality
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abramovitchMSU committed Dec 11, 2015
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12 changes: 11 additions & 1 deletion docs/source/wishlist.rst
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Expand Up @@ -7,4 +7,14 @@ Functionality wishlist

#. Add more modular approach to implementing different tools (perhaps through option specification?)

#. Include the ability to deal with batch effects in an efficient manner, requiring minimal user input
#. Include the ability to deal with batch effects in an efficient manner, requiring minimal user input

#. Support for other sequencing platforms as input (through adding support for SAM, BAM, FASTA, etc.)

#. Operon analysis

#. Definition of UTRs

#. Output read mapping files with normalized expression values

#. Non-reference based analysis

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