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.. _wishlist: | ||
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Functionality wishlist | ||
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#. Add paired-end support for SPARTA | ||
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#. Add more modular approach to implementing different tools (perhaps through option specification?) | ||
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#. Include the ability to deal with batch effects in an efficient manner, requiring minimal user input | ||
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#. Support for other sequencing platforms as input (through adding support for SAM, BAM, FASTA, etc.) | ||
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#. Operon analysis | ||
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#. Definition of UTRs | ||
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#. Output read mapping files with normalized expression values | ||
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#. Non-reference based analysis |