GitHub - abreschi/utils

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Name		Name	Last commit message	Last commit date
Latest commit History 206 Commits
stats		stats
GC.profile.sh		GC.profile.sh
RAMPAGE2gene.py		RAMPAGE2gene.py
RAMPAGE2matrix.py		RAMPAGE2matrix.py
README.md		README.md
addGtfTags.sh		addGtfTags.sh
analyze.gtf.sh		analyze.gtf.sh
astalavista2exons.py		astalavista2exons.py
averageMultipleBigWig.sh		averageMultipleBigWig.sh
bam_chrMT_to_chrM.sh		bam_chrMT_to_chrM.sh
bam_stats2plot.py		bam_stats2plot.py
bed12ToCDS.sh		bed12ToCDS.sh
bigWigSummaryAllChroms.sh		bigWigSummaryAllChroms.sh
bwtoolMatrix2profile.R		bwtoolMatrix2profile.R
classify-antisense.sh		classify-antisense.sh
count.reads.elements.py		count.reads.elements.py
dashboard2tsv.py		dashboard2tsv.py
decorateFaAlign.py		decorateFaAlign.py
exonAlign.py		exonAlign.py
exproj2intron.sh		exproj2intron.sh
extract.gtf.tags.sh		extract.gtf.tags.sh
fetchGeneFromGtf.sh		fetchGeneFromGtf.sh
fillAfterPaste.sh		fillAfterPaste.sh
filterExonerateGff.py		filterExonerateGff.py
filter_fasta.py		filter_fasta.py
get.dashboard.tags.py		get.dashboard.tags.py
gtfToBed12.sh		gtfToBed12.sh
gtfgene2bed6.sh		gtfgene2bed6.sh
hmmer2gff.py		hmmer2gff.py
index-fields.sh		index-fields.sh
join.py		join.py
kmer.counts.sh		kmer.counts.sh
make_exon_mm9_gtf.sh		make_exon_mm9_gtf.sh
make_gene_mm9_gtf.sh		make_gene_mm9_gtf.sh
make_tx_mm9_gtf.sh		make_tx_mm9_gtf.sh
normalizeBigWig.sh		normalizeBigWig.sh
parse.obo.py		parse.obo.py
prepare.matrix.R		prepare.matrix.R
printUrls.py		printUrls.py
proteinGff3ToGenome.py		proteinGff3ToGenome.py
psi.AS.events.pl		psi.AS.events.pl
read-genome-coverage.py		read-genome-coverage.py
retrieve_element_rpkms.py		retrieve_element_rpkms.py
rev-comp.py		rev-comp.py
sam2cufflinks.sh		sam2cufflinks.sh
selectMatrixColumns.sh		selectMatrixColumns.sh
selectMatrixRows.sh		selectMatrixRows.sh
shuffle.pairs.sh		shuffle.pairs.sh
sortMatrix.py		sortMatrix.py
tsv2dashboard.sh		tsv2dashboard.sh
tsv2excel.py		tsv2excel.py
venn.py		venn.py

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Set of utils for processing files in bioinformatics formats

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