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Script to convert mothur taxonomy summary files to Krona XML format.

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BSD-2-Clause license
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accaldwell/mothur_krona

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LICENSE.txt
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mothur_krona_XML.py
mothur_krona_XML.py
 
 

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mothur_krona_XML.py: A script converting mothur's taxonomy summaries into Krona-compatible XML files.

Requirements

  • Mothur (tested with 1.32.1)
  • Python 2.x (tested with 2.7.5)
  • lxml (tested with 3.2.3)
  • Krona (tested with 2.4)

Usage

mothur_krona_XML.py /path/to/tax.summary > output.xml

ktImportXML output.xml

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Script to convert mothur taxonomy summary files to Krona XML format.

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BSD-2-Clause license
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