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fix: GeometryView3D default output directory doesn't work. (#954)
In #917 I introduced an output directory to `GeometryView3D`. I set the default to "." as that usually means the current directory. Due to the way we currently look for file extensions, this didn't actually work. I didn't actually test the default, so that broke the output writing. This PR works around this by checking if the default value "." is given, and replaces this with the actual `$PWD`. This is not super robust, and ideally we should revise all of this using `boost::filesystem`, which I'll try to do in a future PR. Aside from this, this PR also make the geometry examples correctly pipe through the `--output-dir` option to the geometry view output.
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