This is a collection of scripts suitable for estimating the evolutionary age of genes (and recreating my 2015 honors thesis).
Download the data, then run the appropriate scripts to perform the desired analyses
bash download_3rdparty_data.sh
perl lage_pantaxa.pl Compara.phyloxml_aa_trees.22 pantaxa_ages.txt
perl time_species_code.pl species_code
perl age_hogenom.pl
perl lage_hogenom.pl hogenom_aged.txt acc_id5_id6
perl time_taxid_taxname.pl taxid_taxname
perl age_homologene.pl
perl lage_homologene.pl homologene_aged.txt homologene.data.txt