Build a Container for the deseq2-docker
Steps to build this docker container.
Set up GitHub Actions To build your image from the command line:
Can do this on Google shell - docker is installed and available
docker build -t deseq2 .
To test this tool from the command line
Set up an environment variable capturing your current command line:
PWD=$(pwd)
Then mount and use your current directory and call the tool now encapsulated within the environment. The input to DESeq2 is one single matrix.
docker run -it -v $PWD:$PWD -w $PWD gmsd Rscript combine-matrices.R