Update the GitHub repo af 'ade4': 'ade4' now belongs to the 'adeverse…

…' organization'

DESCRIPTION

@@ -53,6 +53,6 @@ VignetteBuilder:
     knitr
 Description: Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007) <doi:10.18637/jss.v022.i04>.
 License: GPL (>= 2)
-URL: https://sdray.github.io/ade4/, http://pbil.univ-lyon1.fr/ADE-4/
-BugReports: https://github.com/sdray/ade4/issues
+URL: https://adeverse.github.io/ade4/, http://pbil.univ-lyon1.fr/ADE-4/
+BugReports: https://github.com/adeverse/ade4/issues
 Encoding: UTF-8

README.md

@@ -1,11 +1,27 @@
 # [ade4](http://pbil.univ-lyon1.fr/ADE-4/) <img src="man/figures/logo.svg" align="right" />
+
 [![CRAN_Release_Badge](http://www.r-pkg.org/badges/version-ago/ade4)](http://cran.r-project.org/package=ade4)
 [![CRAN Downloads](https://cranlogs.r-pkg.org/badges/ade4)](https://cran.r-project.org/package=ade4)
-[![R-CMD-check](https://github.com/sdray/ade4/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/sdray/ade4/actions/workflows/R-CMD-check.yaml)
+[![R-CMD-check](https://github.com/adeverse/ade4/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/adeverse/ade4/actions/workflows/R-CMD-check.yaml)
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
 
 Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
 
+---------------------------
+
+**Please note! Since January 2024, this repository has belonged to the *adeverse* organization.**
+To avoid confusion, we strongly recommend updating any existing local clones to point to the new 
+repository URL. You can do this by using `git remote` on the command line:
+
+`git remote set-url origin git@github.com:adeverse/ade4.git`
+
+or 
+
+`git remote set-url origin https://github.com/adeverse/ade4.git`
+
+---------------------------
+
+
 Installing *ade4*
 -------------
 
@@ -21,7 +37,7 @@ To install the development version from github:
 Then:
 
 ```r
-remotes::install_github("sdray/ade4")
+remotes::install_github("adeverse/ade4")
 ```
 
 The stable version can be installed from CRAN using:

_pkgdown.yml

@@ -54,7 +54,7 @@ navbar:
       icon: fa-leaf
       href: https://lbbe-web.univ-lyon1.fr/en
     - icon: fa-github
-      href: https://github.com/sdray/ade4
+      href: https://github.com/adeverse/ade4
 
 
 reference:

pkgdown/index.md

@@ -1,7 +1,7 @@
 # Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences (**ade4**) <img src="man/figures/logo.svg" align="right" />
 [![CRAN_Release_Badge](http://www.r-pkg.org/badges/version-ago/ade4)](http://cran.r-project.org/package=ade4)
 [![CRAN Downloads](https://cranlogs.r-pkg.org/badges/ade4)](https://cran.r-project.org/package=ade4)
-[![R-CMD-check](https://github.com/sdray/ade4/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/sdray/ade4/actions/workflows/R-CMD-check.yaml)
+[![R-CMD-check](https://github.com/adeverse/ade4/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/adeverse/ade4/actions/workflows/R-CMD-check.yaml)
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
 
 ## 	Presentation
@@ -10,9 +10,9 @@
 
 **ade4** is a package for the [**R** software](https://www.r-project.org) since 2002. It contains functions for exploratory multivariate data analysis and graphical display, many numerical data sets and bibliographic references. Simple one-table methods are described in [Chessel et al. (2004)](http://pbil.univ-lyon1.fr/JTHome/ref/ade4-Rnews.pdf). Two-table and K-table methods are described in [Dray et al. (2007)](http://pbil.univ-lyon1.fr/ade4/article/rnews2/rnews2.pdf). The theory of the duality diagram and its implementation in ade4 are discussed in [Dray et Dufour (2007)](http://pbil.univ-lyon1.fr/ade4/article/jss/jss.pdf).
 
-A book in the *Springer Series in Statistics* collection, [**"Multivariate Analysis of Ecological Data with ade4"**](http://sdray.github.io/ade4/articles/book.html) presents the package. The examples and the graphs in this book can be [**reproduced online here**](https://lbbe-shiny.univ-lyon1.fr/Reproducible_Research/Book/).
+A book in the *Springer Series in Statistics* collection, [**"Multivariate Analysis of Ecological Data with ade4"**](http://adeverse.github.io/ade4/articles/book.html) presents the package. The examples and the graphs in this book can be [**reproduced online here**](https://lbbe-shiny.univ-lyon1.fr/Reproducible_Research/Book/).
 
-If you use **ade4**, please consider citing [these references](http://sdray.github.io/ade4/authors.html#citation) !
+If you use **ade4**, please consider citing [these references](http://adeverse.github.io/ade4/authors.html#citation) !
 
 <p align="center">
 <a href="https://www.springer.com/fr/book/9781493988488"><img src="https://pbil.univ-lyon1.fr/members/thioulouse/github/Book.png"  width="207" height="312" border="0" alt=""></a>
@@ -30,34 +30,34 @@ If you use **ade4**, please consider citing [these references](http://sdray.gith
 
 ### Installing **ade4**
 
-[This page](http://sdray.github.io/ade4/articles/install.html) explains how to install the **ade4** package in **R**.
+[This page](http://adeverse.github.io/ade4/articles/install.html) explains how to install the **ade4** package in **R**.
 
 ### Vignettes
 
 Several vignettes are available to help you get started with **ade4** (more to come soon !):
 
 - [Graphical representation of multivariate data](https://cran.r-project.org/web/packages/adegraphics/vignettes/adegraphics.html)
 
-- [Description of environmental variables structures](http://sdray.github.io/ade4/articles/ChapEnvVarStruct.html)
+- [Description of environmental variables structures](http://adeverse.github.io/ade4/articles/ChapEnvVarStruct.html)
 
-- [Description of species structures](http://sdray.github.io/ade4/articles/ChapSpeciesStruct.html)
+- [Description of species structures](http://adeverse.github.io/ade4/articles/ChapSpeciesStruct.html)
 
-- [Taking into account groups of sites](http://sdray.github.io/ade4/articles/ChapBetGr.html)
+- [Taking into account groups of sites](http://adeverse.github.io/ade4/articles/ChapBetGr.html)
 
-- [Description of species-environment relationships](http://sdray.github.io/ade4/articles/Chap2tables.html)
+- [Description of species-environment relationships](http://adeverse.github.io/ade4/articles/Chap2tables.html)
 
-- [Analysing Changes in Structures](http://sdray.github.io/ade4/articles/ChapKtables.html)
+- [Analysing Changes in Structures](http://adeverse.github.io/ade4/articles/ChapKtables.html)
 
-- [Analysing Changes in Co-structures](http://sdray.github.io/ade4/articles/Chap2Ktables.html)
+- [Analysing Changes in Co-structures](http://adeverse.github.io/ade4/articles/Chap2Ktables.html)
 
 ### List of function references
 
-You can also find a list of functions available to users on the [reference page](http://sdray.github.io/ade4/reference/index.html).
+You can also find a list of functions available to users on the [reference page](http://adeverse.github.io/ade4/reference/index.html).
 
 ### Other resources
 
-Check out the [ade4 book](http://sdray.github.io/ade4/articles/book.html) and its [shiny application](https://lbbe-shiny.univ-lyon1.fr/Reproducible_Research/Book/) for a complete introduction to the package and to rerun the code present in the book. 
-You can also check these [bibliographic references](http://sdray.github.io/ade4/articles/papers.html) to help you understand **ade4** methods.
+Check out the [ade4 book](http://adeverse.github.io/ade4/articles/book.html) and its [shiny application](https://lbbe-shiny.univ-lyon1.fr/Reproducible_Research/Book/) for a complete introduction to the package and to rerun the code present in the book. 
+You can also check these [bibliographic references](http://adeverse.github.io/ade4/articles/papers.html) to help you understand **ade4** methods.
 
 Note for nostalgics &#x1F609; : the **old ade4 web site** is still available here: [http://pbil.univ-lyon1.fr/ADE-4/](http://pbil.univ-lyon1.fr/ADE-4/accueil2.php). 
 
@@ -68,5 +68,5 @@ You will be able to download the R script used to generate the results as well a
 
 ### Getting help: FAQ & Mailing list
 
-You can also check the [FAQ section](http://sdray.github.io/ade4/articles/faq.html) to check if your question has already been answered or ask for help on the **ade4** mailing list [adelist](https://listes.univ-lyon1.fr/sympa/info/adelist).
+You can also check the [FAQ section](http://adeverse.github.io/ade4/articles/faq.html) to check if your question has already been answered or ask for help on the **ade4** mailing list [adelist](https://listes.univ-lyon1.fr/sympa/info/adelist).
 \

vignettes/articles/get_started.Rmd

@@ -5,12 +5,12 @@ title: "Getting started with ade4"
 ## Vignettes
 
 We provide some vignettes to help you get started with `ade4.` 
-You can also find a list of functions available to users on our [reference page](http://sdray.github.io/ade4/reference/index.html).
+You can also find a list of functions available to users on our [reference page](http://adeverse.github.io/ade4/reference/index.html).
 
 ## Ressources
 
 Check out the [`ade4` book](https://link.springer.com/book/10.1007/978-1-4939-8850-1) and its [shiny application](https://ade4.shinyapps.io/Book/) for a complete introduction to the package and to rerun the code present in the book. 
-You can also find hereafter some [papers](http://sdray.github.io/ade4/articles/papers.html) to help you understand `ade4` methods.
+You can also find hereafter some [papers](http://adeverse.github.io/ade4/articles/papers.html) to help you understand `ade4` methods.
 
 ## Shinyapps
 
@@ -19,4 +19,4 @@ You will be able to download the R script used to generate the results as well a
 
 ## Getting help
 
-You can swing by our [FAQ section](http://sdray.github.io/ade4/articles/faq.html) to check if your question has already been answered or ask for help on the `ade4` mailing list [adelist](https://listes.univ-lyon1.fr/sympa/info/adelist).
+You can swing by our [FAQ section](http://adeverse.github.io/ade4/articles/faq.html) to check if your question has already been answered or ask for help on the `ade4` mailing list [adelist](https://listes.univ-lyon1.fr/sympa/info/adelist).

vignettes/articles/install.Rmd

@@ -4,7 +4,7 @@ title: "Installing `ade4`"
 
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/ade4)](http://cran.r-project.org/package=ade4)
 [![CRAN Downloads](https://cranlogs.r-pkg.org/badges/ade4)](https://cran.r-project.org/package=ade4)
-[![R-CMD-check](https://github.com/sdray/ade4/workflows/R-CMD-check/badge.svg)](https://github.com/sdray/ade4/actions)
+[![R-CMD-check](https://github.com/adeverse/ade4/workflows/R-CMD-check/badge.svg)](https://github.com/adeverse/ade4/actions)
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
 
 ## The current *stable* version can be installed from CRAN using:
@@ -25,7 +25,7 @@ install.packages("ade4")
 3. Then you can use the following command:
 
 ```r
-remotes::install_github("sdray/ade4")
+remotes::install_github("adeverse/ade4")
 ```
 
 **Note:** If you do not wish to install the development environments Rtools (Windows) or XCode (Mac), you can get pre-compiled binary packages here:

vignettes/faq.Rmd

@@ -26,7 +26,7 @@ The easiest way to install ade4 is to use `install.packages("ade4")` in your R s
 To install the development version from github:
 
 ```r
-remotes::install_github("sdray/ade4")
+remotes::install_github("adeverse/ade4")
 ```
 
 ### How do I know which `ade4` version I'm using?