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Make file for gnocchi python #7

Merged
merged 2 commits into from
Oct 2, 2017
Merged

Make file for gnocchi python #7

merged 2 commits into from
Oct 2, 2017

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kunalgosar
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@kunalgosar kunalgosar merged commit 9d8109a into adgirish:bindingsDev Oct 2, 2017
adgirish added a commit that referenced this pull request Oct 6, 2017
* adding todo file for java wrapper

* laying out more skeleton code

* added empty interfaces

* todo add method comments

* added empty interfaces

* todo add method comments

* added pom.xml
adgirish added a commit that referenced this pull request Oct 25, 2017
* adding todo file for java wrapper

* laying out more skeleton code

* added empty interfaces

* todo add method comments

* added empty interfaces

* todo add method comments

* added pom.xml
adgirish pushed a commit that referenced this pull request Oct 30, 2017
…omics#32)

* Added python binding boilerplate

* more boilerplate for bindings

* adding todo file for java wrapper

* laying out more skeleton code

* Implemented gnocchiSession python object

* Working on Java Wrapper for Bindings

adgirish: 
* adding todo file for java wrapper

* laying out more skeleton code

* added empty interfaces

* todo add method comments

* added empty interfaces

* todo add method comments

* Bindings (#7)

* adding todo file for java wrapper

* laying out more skeleton code

* added empty interfaces

* todo add method comments

* added empty interfaces

* todo add method comments

* added pom.xml

* Fix Project Modules and pom files

* adding todo file for java wrapper

* laying out more skeleton code

* added empty interfaces

* todo add method comments

* added empty interfaces

* todo add method comments

* added pom.xml

* changing reference in pom.xml

* changing reference in pom.xml v2

* added python pointer wrappers

* Created and Modified pom files

* Updated JavaGnocchiSession and Refactor

* make file for gnocchi-python

* Added assembly and packaging

* Bindingsv3 (#12)

* v1

* resolved import issues, fixed JavaGnocchiSession, corrected BetterPhenotype

* Bindingsv3 (#13)

* v1

* resolved import issues, fixed JavaGnocchiSession, corrected BetterPhenotype

* added test to verify java wrappers

* added test to verify java wrappers

* resolve conflicts - 2

* remove redundant makefile

* updated packing and dependencies

* fixes maven build

* fixed issues with assembly build

* updated load genotypes method

* SparkSession Creation fix for compatibility with pySpark (bigdatagenomics#21)

* rebasing onto nate's branch and moving remaining packages to org.bdgenomics

* resolve dependency issues caused by refactor

* Documentation for JVM and Python Gnocchi Session

* cleaning unused dependencies

* adding JavaGnocchiSession tests (bigdatagenomics#22)

* remove unused dependencies

* resolved nates comments
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