No clear instruction on installation #14
Comments
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HI, https://github.com/adigenova/wengan/releases/download/0.1/wengan-v0.1-bin-Linux.tar.gz there is demo repository with detailed instructions here: https://github.com/adigenova/wengan_demo best, |
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Thanks
Followed this process
export WG=/home/emmanuel/wengan-v0.1-bin-Linux/wengan.pl
qsub wengan.qsub
Error
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia -in
mucuna.minia_reads.41.txt -kmer-size 41 -abundance-min 2 -out
mucuna.minia.41 -minimizer-size 10 -max-memory 5000 -nb-cores 1 2>
mucuna.minia.41.err > mucuna.minia.41.log
make: *** [mucuna.minia.41.contigs.fa] Error 1
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
…On Mon, Feb 10, 2020 at 9:16 AM adigenova ***@***.***> wrote:
HI,
The simplest way is to download the Linux pre-compiled binaries from here:
https://github.com/adigenova/wengan/releases/download/0.1/wengan-v0.1-bin-Linux.tar.gz
there is demo repository with detailed instructions here:
https://github.com/adigenova/wengan_demo
best,
Alex
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can you post the content of : mucuna.minia.41.log and mucuna.minia.41.err thanks |
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cat mucuna.minia.41.err
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia: /lib64/libstdc++.so.6:
version `GLIBCXX_3.4.21' not found (required by
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia)
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia: /lib64/libstdc++.so.6:
version `GLIBCXX_3.4.20' not found (required by
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia)
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia: /lib64/libstdc++.so.6:
version `CXXABI_1.3.8' not found (required by
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia)
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia: /lib64/libstdc++.so.6:
version `GLIBCXX_3.4.22' not found (required by
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia)
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia: /lib64/libstdc++.so.6:
version `CXXABI_1.3.11' not found (required by
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia)
mucuna.minia.41.log is empty
cat wengan.log
/home/emmanuel/wengan-v0.1-bin-Linux/bin/abyss-pe name=mucuna.abyss2 k=96
B=20G H=4 kc=3 v=-v np=1 lib="pe1"
pe1="/mnt/data/emmanuel/wengan/MS01_Mucuna_R1_001._paired.fastq.gz
/mnt/data/emmanuel/wengan/MS01_Mucuna_R2_001._paired.fastq.gz" contigs 2>
mucuna.abyss2.err > mucuna.abyss2.log
make: *** [mucuna.abyss2-contigs.fa] Error 2
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia -in
mucuna.minia_reads.41.txt -kmer-size 41 -abundance-min 2 -out
mucuna.minia.41 -minimizer-size 10 -max-memory 5000 -nb-cores 1 2>
mucuna.minia.41.err > mucuna.minia.41.log
make: *** [mucuna.minia.41.contigs.fa] Error 1
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
…On Mon, Feb 10, 2020 at 10:31 AM Emmanuel Nnadi ***@***.***> wrote:
Thanks
Followed this process
export WG=/home/emmanuel/wengan-v0.1-bin-Linux/wengan.pl
qsub wengan.qsub
Error
/home/emmanuel/wengan-v0.1-bin-Linux/bin/minia -in
mucuna.minia_reads.41.txt -kmer-size 41 -abundance-min 2 -out
mucuna.minia.41 -minimizer-size 10 -max-memory 5000 -nb-cores 1 2>
mucuna.minia.41.err > mucuna.minia.41.log
make: *** [mucuna.minia.41.contigs.fa] Error 1
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
On Mon, Feb 10, 2020 at 9:16 AM adigenova ***@***.***>
wrote:
> HI,
> The simplest way is to download the Linux pre-compiled binaries from here:
>
>
> https://github.com/adigenova/wengan/releases/download/0.1/wengan-v0.1-bin-Linux.tar.gz
>
> there is demo repository with detailed instructions here:
>
> https://github.com/adigenova/wengan_demo
>
> best,
> Alex
>
> —
> You are receiving this because you authored the thread.
> Reply to this email directly, view it on GitHub
> <#14?email_source=notifications&email_token=AHVLNZYNKCZ3Q47C6EXYT4TRCEENVA5CNFSM4KSERXO2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOELHTKCA#issuecomment-584004872>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AHVLNZ3AEXBKIWUG5LZ4Z63RCEENVANCNFSM4KSERXOQ>
> .
>
|
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The problem is that the pre-compiled binaries not found the required GLIB version (`GLIBCXX_3.4.21' not found). So, you have to re-compile from the sources. the commands should be like this: #fetch Wengan and its components for each component, there are specific instructions. I recommend to start building the WenganM pipeline, it requires the compilation of Minia3, fastmin-sg, intervalmiss, liger and seqtk. To compile fastmin-sg, intervalmiss, liger and seqtk, just type "make all" inside each directory. To compile Minia3 you need CMake. In the near future, I'm going to provide a conda package for wengan. Best, |
|
I don't know what the problem is
intervalmiss]$ make all
mkdir obj
g++ -c -o obj/imopts.o src/imopts.cpp -O3 -std=c++11 -lpthread
g++ -c -o obj/MPCollection.o src/MPCollection.cpp -O3 -std=c++11 -lpthread
g++ -c -o obj/main.o src/main.cpp -O3 -std=c++11 -lpthread
g++ -c -o obj/MPLibrary.o src/MPLibrary.cpp -O3 -std=c++11 -lpthread
g++ -c -o obj/Finterval.o src/Finterval.cpp -O3 -std=c++11 -lpthread
g++ -c -o obj/Contig.o src/Contig.cpp -O3 -std=c++11 -lpthread
g++ -c -o obj/SAMR.o src/SAMR.cpp -O3 -std=c++11 -lpthread
g++ -o intervalmiss obj/imopts.o obj/MPCollection.o obj/main.o
obj/MPLibrary.o obj/Finterval.o obj/Contig.o obj/SAMR.o -O3 -std=c++11
-lpthread
obj/Contig.o: In function `std::vector<std::string,
std::allocator<std::string> > splits<std::string>(std::string const&,
std::string const&)':
Contig.cpp:(.text._Z6splitsISsESt6vectorISsSaISsEERKSsRKT_[_Z6splitsISsESt6vectorISsSaISsEERKSsRKT_]+0x87):
undefined reference to
`std::regex_token_iterator<__gnu_cxx::__normal_iterator<char const*,
std::string>, char, std::regex_traits<char>
::regex_token_iterator(__gnu_cxx::__normal_iterator<char const*,
std::string>, __gnu_cxx::__normal_iterator<char const*, std::string>,
std::basic_regex<char, std::regex_traits<char> > const&, int,
std::bitset<11ul>)'
Contig.cpp:(.text._Z6splitsISsESt6vectorISsSaISsEERKSsRKT_[_Z6splitsISsESt6vectorISsSaISsEERKSsRKT_]+0x94):
undefined reference to
`std::regex_token_iterator<__gnu_cxx::__normal_iterator<char const*,
std::string>, char, std::regex_traits<char> >::regex_token_iterator()'
Contig.cpp:(.text._Z6splitsISsESt6vectorISsSaISsEERKSsRKT_[_Z6splitsISsESt6vectorISsSaISsEERKSsRKT_]+0x111):
undefined reference to
`std::regex_token_iterator<__gnu_cxx::__normal_iterator<char const*,
std::string>, char, std::regex_traits<char> >::operator++()'
Contig.cpp:(.text._Z6splitsISsESt6vectorISsSaISsEERKSsRKT_[_Z6splitsISsESt6vectorISsSaISsEERKSsRKT_]+0x123):
undefined reference to
`std::regex_token_iterator<__gnu_cxx::__normal_iterator<char const*,
std::string>, char, std::regex_traits<char>
::operator!=(std::regex_token_iterator<__gnu_cxx::__normal_iterator<char
const*, std::string>, char, std::regex_traits<char> > const&)'
Contig.cpp:(.text._Z6splitsISsESt6vectorISsSaISsEERKSsRKT_[_Z6splitsISsESt6vectorISsSaISsEERKSsRKT_]+0x135):
undefined reference to
`std::regex_token_iterator<__gnu_cxx::__normal_iterator<char const*,
std::string>, char, std::regex_traits<char> >::operator->()'
collect2: error: ld returned 1 exit status
make: *** [intervalmiss] Error 1
fastmin-sg]$ make all
cc -c -g -Wall -O3 -DHAVE_KALLOC -I ./minimap2 fastmin-sg.c -o
fastmin-sg.o
*fastmin-sg.c:* In function '*revcomp*':
*fastmin-sg.c:94:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int i = 0; i < klen>>1; ++i) { // reverse complement sequence
* ^*
*fastmin-sg.c:94:5:* *note: *use option -std=c99 or -std=gnu99 to compile
your code
*fastmin-sg.c:* In function '*maplongreads*':
*fastmin-sg.c:257:3:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int i = 0; i < libcount; ++i) headhits[i]=NULL;
* ^*
*fastmin-sg.c:311:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i< rseq ; i++){ // each kseq_read() call reads one query
sequence
* ^*
*fastmin-sg.c:313:6:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int ii=0; ii<libcount; ii++){
* ^*
*fastmin-sg.c:320:7:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int l=0; l<max_d; l+=moving_w){
* ^*
*fastmin-sg.c:388:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int f = 0; f < libcount; ++f)
* ^*
*fastmin-sg.c:411:17:* *error: *conflicting types for '*i*'
for (size_t i = 0; i < rseq; i++) {
* ^*
*fastmin-sg.c:311:13:* *note: *previous definition of '*i*' was here
for(int i=0; i< rseq ; i++){ // each kseq_read() call reads one query
sequence
* ^*
*fastmin-sg.c:411:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (size_t i = 0; i < rseq; i++) {
* ^*
*fastmin-sg.c:* In function '*map_long_read_files*':
*fastmin-sg.c:465:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i<libcount; i++){
* ^*
*fastmin-sg.c:488:13:* *error: *redefinition of '*i*'
for(int i =0; i < alnp->n_threads; ++i) tbuf[i] = mm_tbuf_init();
* ^*
*fastmin-sg.c:465:13:* *note: *previous definition of '*i*' was here
for(int i=0; i<libcount; i++){
* ^*
*fastmin-sg.c:488:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i =0; i < alnp->n_threads; ++i) tbuf[i] = mm_tbuf_init();
* ^*
*fastmin-sg.c:490:13:* *error: *redefinition of '*i*'
for(int i=0; i < alnp->n_threads; i++){
* ^*
*fastmin-sg.c:488:13:* *note: *previous definition of '*i*' was here
for(int i =0; i < alnp->n_threads; ++i) tbuf[i] = mm_tbuf_init();
* ^*
*fastmin-sg.c:490:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i < alnp->n_threads; i++){
* ^*
*fastmin-sg.c:507:13:* *error: *redefinition of '*i*'
for(int i=0; i< alnp->n_threads; ++i) pthread_join(tid[i], NULL);
* ^*
*fastmin-sg.c:490:13:* *note: *previous definition of '*i*' was here
for(int i=0; i < alnp->n_threads; i++){
* ^*
*fastmin-sg.c:507:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i< alnp->n_threads; ++i) pthread_join(tid[i], NULL);
* ^*
*fastmin-sg.c:509:13:* *error: *redefinition of '*i*'
for(int i=0; i<alnp->n_threads; i++) mm_tbuf_destroy(tbuf[i]);
* ^*
*fastmin-sg.c:507:13:* *note: *previous definition of '*i*' was here
for(int i=0; i< alnp->n_threads; ++i) pthread_join(tid[i], NULL);
* ^*
*fastmin-sg.c:509:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i<alnp->n_threads; i++) mm_tbuf_destroy(tbuf[i]);
* ^*
*fastmin-sg.c:515:13:* *error: *redefinition of '*i*'
for(int i=0; i<libcount ; i++){
* ^*
*fastmin-sg.c:509:13:* *note: *previous definition of '*i*' was here
for(int i=0; i<alnp->n_threads; i++) mm_tbuf_destroy(tbuf[i]);
* ^*
*fastmin-sg.c:515:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i<libcount ; i++){
* ^*
*fastmin-sg.c:* In function '*rescue_pair*':
*fastmin-sg.c:532:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i<n_reg; i++){
* ^*
*fastmin-sg.c:* In function '*mapshortreads*':
*fastmin-sg.c:579:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int i = 0; i < libcount; ++i) headhits[i]=NULL;
* ^*
*fastmin-sg.c:652:13:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i< rseq ; i++){ // each kseq_read() call reads
one query sequence
* ^*
*fastmin-sg.c:759:13:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int f = 0; f < libcount; ++f)
* ^*
*fastmin-sg.c:789:25:* *error: *conflicting types for '*i*'
for (size_t i = 0; i < rseq; i++) {
* ^*
*fastmin-sg.c:652:21:* *note: *previous definition of '*i*' was here
for(int i=0; i< rseq ; i++){ // each kseq_read() call reads
one query sequence
* ^*
*fastmin-sg.c:789:13:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (size_t i = 0; i < rseq; i++) {
* ^*
*fastmin-sg.c:* In function '*infer_insert_size*':
*fastmin-sg.c:895:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i<1; i++) mm_tbuf_destroy(tbuf[i]);
* ^*
*fastmin-sg.c:909:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int n=beg; n<end+1; n++) {
* ^*
*fastmin-sg.c:917:14:* *error: *redefinition of '*n*'
for (int n=beg; n<end+1; n++) {
* ^*
*fastmin-sg.c:909:14:* *note: *previous definition of '*n*' was here
for (int n=beg; n<end+1; n++) {
* ^*
*fastmin-sg.c:917:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for (int n=beg; n<end+1; n++) {
* ^*
*fastmin-sg.c:* In function '*map_short_read_files*':
*fastmin-sg.c:990:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i =0; i < alnp->n_threads; ++i) tbuf[i] = mm_tbuf_init();
* ^*
*fastmin-sg.c:992:13:* *error: *redefinition of '*i*'
for(int i=0; i < alnp->n_threads; i++){
* ^*
*fastmin-sg.c:990:13:* *note: *previous definition of '*i*' was here
for(int i =0; i < alnp->n_threads; ++i) tbuf[i] = mm_tbuf_init();
* ^*
*fastmin-sg.c:992:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i < alnp->n_threads; i++){
* ^*
*fastmin-sg.c:1011:13:* *error: *redefinition of '*i*'
for(int i=0; i< alnp->n_threads; ++i) pthread_join(tid[i], NULL);
* ^*
*fastmin-sg.c:992:13:* *note: *previous definition of '*i*' was here
for(int i=0; i < alnp->n_threads; i++){
* ^*
*fastmin-sg.c:1011:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i< alnp->n_threads; ++i) pthread_join(tid[i], NULL);
* ^*
*fastmin-sg.c:1013:13:* *error: *redefinition of '*i*'
for(int i=0; i<alnp->n_threads; i++) mm_tbuf_destroy(tbuf[i]);
* ^*
*fastmin-sg.c:1011:13:* *note: *previous definition of '*i*' was here
for(int i=0; i< alnp->n_threads; ++i) pthread_join(tid[i], NULL);
* ^*
*fastmin-sg.c:1013:5:* *error: *'*for*' loop initial declarations are only
allowed in C99 mode
for(int i=0; i<alnp->n_threads; i++) mm_tbuf_destroy(tbuf[i]);
* ^*
make: *** [fastmin-sg.o] Error
I don't know if anyone has thesame experiences.
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
…On Mon, Feb 10, 2020 at 10:59 AM adigenova ***@***.***> wrote:
The problem is that the pre-compiled binaries not found the required GLIB
version (`GLIBCXX_3.4.21' not found). So, you have to re-compile from the
sources.
the commands should be like this:
#fetch Wengan and its components
git clone --recursive https://github.com/adigenova/wengan.git wengan
for each component, there are specific instructions.
I recommend to start building the WenganM pipeline, it requires the
compilation of Minia3, fastmin-sg, intervalmiss, liger and seqtk.
To compile fastmin-sg, intervalmiss, liger and seqtk, just type "make all"
inside each directory.
To compile Minia3 you need CMake.
In the near future, I'm going to provide a conda package for wengan.
Best,
Alex
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Can you post the result of: gcc --version It seems that you have an old GCC compiler. best, |
|
gcc --version
gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE
g++ --version
g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
…On Mon, Feb 10, 2020 at 12:20 PM adigenova ***@***.***> wrote:
Can you post the result of:
gcc --version
g++ --version
It seems that you have an old GCC compiler.
best,
Alex
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Ok, that is the problem , your C++ compiler is old, wengan was compilation was tested with: with GCC version GCC/7.3.0-2.30 or higher. So, to solve your issues, I recommend updating your GCC compiler (i.e > 7.) Best, |
|
switched to
gcc (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE
but have this error
make: *** No targets specified and no makefile found. Stop.
Running simple test...
could not find a compiled Minia binary
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
…On Mon, Feb 10, 2020 at 12:31 PM adigenova ***@***.***> wrote:
Ok, that is the problem , your C++ compiler is old, wengan was compilation
was tested with:
with GCC version GCC/7.3.0-2.30 or higher.
So, to solve your issues, I recommend updating your GCC compiler (i.e > 7.)
Best,
Alex
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Great!!!, for compiling minia you have to run inside the directory: After compilation of all the components listed above, you have to copy them to ${ROOT_WENGAN}/bin. best, Alex |
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Followed this step
cd minia
sh INSTALL
Cloning into 'thirdparty/gatb-core'...
remote: Enumerating objects: 8, done.
remote: Counting objects: 100% (8/8), done.
remote: Compressing objects: 100% (8/8), done.
remote: Total 29368 (delta 0), reused 3 (delta 0), pack-reused 29360
Receiving objects: 100% (29368/29368), 47.96 MiB | 23.36 MiB/s, done.
Resolving deltas: 100% (17999/17999), done.
Submodule path 'thirdparty/gatb-core': checked out
'664696cbc3877d4eb6c3f10f87434efd4c0c83b4'
…-- The C compiler identification is GNU 7.3.1
-- The CXX compiler identification is GNU 7.3.1
-- Check for working C compiler: /opt/rh/devtoolset-7/root/usr/bin/cc
-- Check for working C compiler: /opt/rh/devtoolset-7/root/usr/bin/cc --
works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/rh/devtoolset-7/root/usr/bin/c++
-- Check for working CXX compiler: /opt/rh/devtoolset-7/root/usr/bin/c++ --
works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
Git version: 5b131b9
-- gatb-core is here
'/home/emmanuel/wengan/components/minia/thirdparty/gatb-core/gatb-core'
CMake Error at thirdparty/gatb-core/gatb-core/CMakeLists.txt:4
(cmake_minimum_required):
CMake 3.10.0 or higher is required. You are running version 2.8.12.2
-- Configuring incomplete, errors occurred!
See also
"/home/emmanuel/wengan/components/minia/build/CMakeFiles/CMakeOutput.log".
make: *** No targets specified and no makefile found. Stop.
Running simple test...
could not find a compiled Minia binary
And still had same error
On Mon, 10 Feb 2020 at 2:23 PM, adigenova ***@***.***> wrote:
Great!!!, for compiling minia you have to run inside the directory:
compile the code an run a simple test on your computer
cd minia
sh INSTALL
After compilation of all the components listed above, you have to copy
them to ${ROOT_WENGAN}/bin.
best,
Alex
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The problem now is cmake, check this line in the log that you posted: CMake 3.10.0 or higher is required. You are running version 2.8.12.2update your cmake >= 3.1 best |
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As a quick fix I installed minia using conda and created a symbolic link in
the wegan/bin folder. This seem to work
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
…On Mon, Feb 10, 2020 at 3:01 PM adigenova ***@***.***> wrote:
The problem now is cmake, check this line in the log that you posted:
CMake 3.10.0 or higher is required. You are running version 2.8.12.2
update your cmake >= 3.1
best
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OK, great!!! |
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Hello,
There seem to be no clear instruction on how to install this program. Can it be made simpler?
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