cati: Communities Assembly by Traits: Individuals and beyond
A R package to detect communities assembly processes by functionnal traits
The package is described in Ecography: cati: an R package using functional traits to detect and quantify multi-level community assembly processes.
Install the latest versions of all dependencies from CRAN:
install.packages(c("devtools", "e1071", "mice", "rasterVis", "hypervolume", "FD", "geometry", "vegan", "nlme", "ade4", "ape"))Install cati's current development version from Github:
devtools::install_github("adrientaudiere/cati/pkg/cati")Install cati's cran version:
Note that the CRAN version is not available anymore. Please use the installation using devtools::install_github (see above).
# install.packages("cati")Attach the package and you are ready to start:
library(cati)There's a tutorial which illustrate the cati package using Darwin finches data.
How to cite?
"Taudiere, A. and Violle, C. (2016), cati: an R package using functional traits to detect and quantify multi-level community assembly processes. Ecography. doi: 10.1111/ecog.01433"