Add support for github-ci and add admin for standard releasing proced…

…ures

Signed-off-by: Adam.Dybbroe <a000680@c21856.ad.smhi.se>

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,19 @@
+#### Code Sample, a minimal, complete, and verifiable piece of code
+
+```python
+# Your code here
+
+```
+#### Problem description
+
+[this should also explain **why** the current behaviour is a problem and why the 
+expected output is a better solution.]
+
+#### Expected Output
+
+#### Actual Result, Traceback if applicable
+
+#### Versions of Python, package at hand and relevant dependencies
+
+
+Thank you for reporting an issue !

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,7 @@
+<!-- Describe what your PR does, and why -->
+
+ - [ ] Closes #xxxx <!-- remove if there is no corresponding issue, which should only be the case for minor changes -->
+ - [ ] Tests added <!-- for all bug fixes or enhancements -->
+ - [ ] Tests passed: Passes ``pytest pyspectral`` <!-- for all non-documentation changes) -->
+ - [ ] Passes ``flake8`` <!-- remove if you did not edit any Python files -->
+ - [ ] Fully documented <!-- remove if this change should not be visible to users, e.g., if it is an internal clean-up, or if this is part of a larger project that will be documented later -->

.github/workflows/ci.yaml

@@ -0,0 +1,90 @@
+name: CI
+
+on: [push, pull_request]
+
+jobs:
+  test:
+    runs-on: ${{ matrix.os }}
+    continue-on-error: ${{ matrix.experimental }}
+    strategy:
+      fail-fast: true
+      matrix:
+        os: ["ubuntu-latest", "macos-latest"]
+        python-version: ["3.7", "3.8", "3.9"]
+        experimental: [false]
+        include:
+          - python-version: "3.9"
+            os: "ubuntu-latest"
+            experimental: true
+
+    env:
+      PYTHON_VERSION: ${{ matrix.python-version }}
+      OS: ${{ matrix.os }}
+      UNSTABLE: ${{ matrix.experimental }}
+      ACTIONS_ALLOW_UNSECURE_COMMANDS: true
+
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v2
+
+      - name: Setup Conda Environment
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          miniconda-version: "latest"
+          python-version: ${{ matrix.python-version }}
+          mamba-version: "*"
+          channels: conda-forge,defaults
+          environment-file: continuous_integration/environment.yaml
+          activate-environment: test-environment
+
+      - name: Install unstable dependencies
+        if: matrix.experimental == true
+        shell: bash -l {0}
+        run: |
+          python -m pip install \
+          -f https://7933911d6844c6c53a7d-47bd50c35cd79bd838daf386af554a83.ssl.cf2.rackcdn.com \
+          --no-deps --pre --upgrade \
+          dask \
+          numpy \
+          xarray \
+          h5netcdf; \
+          python -m pip install \
+          --no-deps --upgrade \
+          git+https://github.com/pytroll/pyspectral \
+          git+https://github.com/pytroll/trollsift \
+          git+https://github.com/pytroll/satpy \
+          git+https://github.com/pytroll/pyorbital;
+
+      - name: Install level1c4pps
+        shell: bash -l {0}
+        run: |
+          pip install --no-deps -e .
+
+      - name: Run unit tests
+        shell: bash -l {0}
+        run: |
+          pytest --cov=level1c4pps level1c4pps/tests --cov-report=xml --cov-report=
+
+      - name: Upload unittest coverage to Codecov
+        uses: codecov/codecov-action@v1
+        with:
+          flags: unittests
+          file: ./coverage.xml
+          env_vars: OS,PYTHON_VERSION,UNSTABLE
+          fail_ci_if_error: false
+
+      - name: Coveralls Parallel
+        uses: AndreMiras/coveralls-python-action@develop
+        with:
+          flag-name: run-${{ matrix.test_number }}
+          parallel: true
+        if: runner.os == 'Linux'
+
+  coveralls:
+    needs: [test]
+    runs-on: ubuntu-latest
+    steps:
+      - name: Coveralls Finished
+        uses: AndreMiras/coveralls-python-action@develop
+        with:
+          parallel-finished: true

.github/workflows/deploy-sdist.yaml

@@ -0,0 +1,25 @@
+name: Deploy sdist
+
+on:
+  release:
+    types:
+      - published
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v2
+
+      - name: Create sdist
+        shell: bash -l {0}
+        run: python setup.py sdist
+
+      - name: Publish package to PyPI
+        if: github.event.action == 'published'
+        uses: pypa/gh-action-pypi-publish@v1.4.1
+        with:
+          user: __token__
+          password: ${{ secrets.pypi_password }}

CHANGELOG.md

@@ -0,0 +1,2 @@
+## Version <v0.2.2> (2021/05/19)
+

README.md

@@ -1,6 +1,13 @@
-# level1c4pps
-Tools to generate NWCSAF/PPS level-1C formattet netCDF files from various agency specific level-1 formats.
-So far supports
+level1c4pps
+===========
+
+[![Build status](https://github.com/foua-pps/level1c4pps/workflows/CI/badge.svg?branch=main)](https://github.com/foua-pps/level1c4pps/workflows/CI/badge.svg?branch=master)
+[![Coverage Status](https://coveralls.io/repos/github/foua-pps/level1c4pps/badge.svg)](https://coveralls.io/github/foua-pps/level1c4pps)
+
+
+Tools to generate NWCSAF/PPS level-1C formattet netCDF files from various
+agency specific level-1 formats. So far, supports
+
  - EUMETSAT Meteosat Second Generation SEVIRI HRIT level-1.5
  - NOAA AVHRR GAC
  - MERSI-2 level-1

RELEASING.md

@@ -0,0 +1,37 @@
+# Releasing activefires-pp
+
+prerequisites: `pip install setuptools twine`
+
+
+1. checkout main
+2. pull from repo
+3. run the unittests
+4. run `loghub` and update the `CHANGELOG.md` file:
+
+```
+loghub foua-pps/level1c4pps --token <personal access token (see https://github.com/settings/tokens)>  -st v<previous version> -plg bug "Bugs fixed" -plg enhancement "Features added" -plg documentation "Documentation changes"
+```
+
+Don't forget to commit!
+
+5. Create a tag with the new version number, starting with a 'v', eg:
+
+```
+git tag -a v0.1.1 -m "Version 0.1.1"
+```
+
+See [semver.org](http://semver.org/) on how to write a version number.
+
+
+6. push changes to github `git push --follow-tags`
+
+7. Verify the Github actions unit tests passed
+
+8. Create a "Release" on GitHub by going to
+   https://github.com/adybbroe/activefires-pp/releases and clicking "Draft a new
+   release". On the next page enter the newly created tag in the "Tag version"
+   field, "Version X.Y.Z" in the "Release title" field, and paste the markdown
+   from the changelog (the portion under the version section header) in the
+   "Describe this release" box. Finally click "Publish release".
+
+9. Verify the GitHub actions for deployment succeed and the release is on PyPI

continuous_integration/environment.yaml

@@ -0,0 +1,26 @@
+name: test-environment
+channels:
+  - conda-forge
+dependencies:
+  - distributed
+  - toolz
+  - sphinx
+  - dask
+  - pyyaml
+  - pyproj
+  - coveralls
+  - coverage
+  - codecov
+  - behave
+  - mock
+  - numpy
+  - xarray
+  - satpy
+  - pyspectral
+  - h5netcdf
+  - pyorbital
+  - pytest
+  - pytest-cov
+  - pip
+  - pip:
+    - trollsift

setup.py

@@ -25,6 +25,7 @@
 """Scripts to convert various satellite level-1 data formats to NWCSAF/PPS level-1c format."""
 
 from setuptools import setup
+from setuptools import find_packages
 
 try:
     # HACK: https://github.com/pypa/setuptools_scm/issues/190#issuecomment-351181286
@@ -53,7 +54,7 @@
                    "Programming Language :: Python",
                    "Topic :: Scientific/Engineering"],
       url="https://github.com/foua-pps/level1c4pps",
-      packages=['level1c4pps', ],
+      packages=find_packages(),
       scripts=['bin/seviri2pps.py',
                'bin/gac2pps.py',
                'bin/mersi22pps.py',