MIMIC-CXR labels not available

[2533245542]

Hi,

I have access to MIMIC-CXR but the labels of the google link was not authenticated. I contacted Chen, the original author but didn't get replied. Could you send me a copy of the labels?

https://drive.google.com/file/d/1DS6NYirOXQf8qYieSVMvqNwuOlgAbM_E/view?usp=sharing

[anicolson]

Hi,

Unfortunately, that file is 150 MB and too big to send you here.

How long has it been since you messaged them?

[2533245542]

Thanks for the promptly reply. I requested the access a week ago. How long does it take to you to get them back?

Send me via email will be fine though, if you are willing to. My email address is wzhou87 at uw dot edu.

[anicolson]

I don't think it used to be password protected. I'll try emailing.

Side note: just letting you know if you are not aware that Chen et al. does additional formatting on these reports: https://github.com/cuhksz-nlp/R2Gen/blob/main/modules/tokenizers.py (also, he uses a maximum of 60 words from https://github.com/cuhksz-nlp/R2Gen/blob/5a2e63f6d8da670725b1926317b4bfd1393ec51b/main.py#L22)

[anicolson]

Error sending the email Get Outlook for iOS<https://aka.ms/o0ukef>

…

________________________________ From: 2533245542 ***@***.***> Sent: Wednesday, October 26, 2022 12:11:09 PM To: aehrc/cvt2distilgpt2 ***@***.***> Cc: Nicolson, Aaron (H&B, Herston) ***@***.***>; Comment ***@***.***> Subject: Re: [aehrc/cvt2distilgpt2] MIMIC-CXR labels not available (Issue #5) Thanks for the promptly reply. I requested the access a week ago. How long does it take to you to get them back? Send me via email will be fine though, if you are willing to. My email address is ***@***.*** — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AGHGZ7TLLVNUDYXN2BUJOLTWFCHL3ANCNFSM6AAAAAAROQA7ZA>. You are receiving this because you commented.Message ID: ***@***.***>

[2533245542]

Is it an error of the email address, or the protection policy of my school? If it is the latter one, I usually edited the file name to avoid having an understandable suffix. For example, changing, .py to .ppy.

[anicolson]

I am not quite sure what the reason is, sorry. Do you have another email address? Aaron Nicolson, PhD Postdoctoral research fellow | CSIRO ***@***.******@***.***> | +61 422 878 045 From: 2533245542 ***@***.***> Sent: Thursday, 27 October 2022 4:38 AM To: aehrc/cvt2distilgpt2 ***@***.***> Cc: Nicolson, Aaron (H&B, Herston) ***@***.***>; Comment ***@***.***> Subject: Re: [aehrc/cvt2distilgpt2] MIMIC-CXR labels not available (Issue #5) Is it an error of the email address, or the protection policy of my school? If it is the latter one, I usually edited the file name to avoid having an understandable suffix. For example, changing, .py to .ppy. — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AGHGZ7RTS4DHTENWKJ4IKBLWFF27PANCNFSM6AAAAAAROQA7ZA>. You are receiving this because you commented.Message ID: ***@***.******@***.***>>

[2533245542]

Sure. Could you try `tracyzhoeipng AT gmail DOT com`?

…

On Oct 26, 2022, at 6:36 PM, Aaron Nicolson ***@***.***> wrote: I am not quite sure what the reason is, sorry. Do you have another email address? Aaron Nicolson, PhD Postdoctoral research fellow | CSIRO ***@***.******@***.***> | +61 422 878 045 From: 2533245542 ***@***.***> Sent: Thursday, 27 October 2022 4:38 AM To: aehrc/cvt2distilgpt2 ***@***.***> Cc: Nicolson, Aaron (H&B, Herston) ***@***.***>; Comment ***@***.***> Subject: Re: [aehrc/cvt2distilgpt2] MIMIC-CXR labels not available (Issue #5) Is it an error of the email address, or the protection policy of my school? If it is the latter one, I usually edited the file name to avoid having an understandable suffix. For example, changing, .py to .ppy. — Reply to this email directly, view it on GitHub<#5 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AGHGZ7RTS4DHTENWKJ4IKBLWFF27PANCNFSM6AAAAAAROQA7ZA>. You are receiving this because you commented.Message ID: ***@***.******@***.***>> — Reply to this email directly, view it on GitHub <#5 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AGZSFULDN7X66UI2MOQWECLWFHMC5ANCNFSM6AAAAAAROQA7ZA>. You are receiving this because you authored the thread.

[jinghaoliu]

Hi Aaron,

I've had no official response either. Could you send me a copy of MIMIC caption labels at your convenience? (jinghaoliu@hotmail.com)

[anicolson]

Hi,

Please look at the updated README.md for the annotations.