GitHub - ael54/GAPIT

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 82 Commits
GAPIT.0000.R		GAPIT.0000.R
GAPIT.Block.R		GAPIT.Block.R
GAPIT.Bread.R		GAPIT.Bread.R
GAPIT.Builder.bat		GAPIT.Builder.bat
GAPIT.Burger.R		GAPIT.Burger.R
GAPIT.CVMergePC.R		GAPIT.CVMergePC.R
GAPIT.Compress.R		GAPIT.Compress.R
GAPIT.Compression.Visualization.R		GAPIT.Compression.Visualization.R
GAPIT.Create.Indicator.R		GAPIT.Create.Indicator.R
GAPIT.EMMAxP3D.R		GAPIT.EMMAxP3D.R
GAPIT.Fragment.R		GAPIT.Fragment.R
GAPIT.GS.R		GAPIT.GS.R
GAPIT.GS.Visualization.R		GAPIT.GS.Visualization.R
GAPIT.Genotype.R		GAPIT.Genotype.R
GAPIT.HapMap.R		GAPIT.HapMap.R
GAPIT.Liner.R		GAPIT.Liner.R
GAPIT.Log.R		GAPIT.Log.R
GAPIT.MAF.R		GAPIT.MAF.R
GAPIT.Main.R		GAPIT.Main.R
GAPIT.Manhattan.R		GAPIT.Manhattan.R
GAPIT.Memory.Object.R		GAPIT.Memory.Object.R
GAPIT.Memory.R		GAPIT.Memory.R
GAPIT.Numericalization.R		GAPIT.Numericalization.R
GAPIT.PCA.R		GAPIT.PCA.R
GAPIT.Perform.BH.FDR.Multiple.Correction.Procedure.R		GAPIT.Perform.BH.FDR.Multiple.Correction.Procedure.R
GAPIT.Phenotype.Simulation.R		GAPIT.Phenotype.Simulation.R
GAPIT.Power.R		GAPIT.Power.R
GAPIT.Pruning.R		GAPIT.Pruning.R
GAPIT.QC.R		GAPIT.QC.R
GAPIT.QQ.R		GAPIT.QQ.R
GAPIT.R		GAPIT.R
GAPIT.RemoveDuplicate.R		GAPIT.RemoveDuplicate.R
GAPIT.Report.R		GAPIT.Report.R
GAPIT.SUPER.FastMLM.R		GAPIT.SUPER.FastMLM.R
GAPIT.Specify.R		GAPIT.Specify.R
GAPIT.Table.R		GAPIT.Table.R
GAPIT.Timmer.R		GAPIT.Timmer.R
GAPIT.ZmatrixCompress.R		GAPIT.ZmatrixCompress.R
GAPIT.ZmatrixFormation.R		GAPIT.ZmatrixFormation.R
GAPIT.emma.REMLE.R		GAPIT.emma.REMLE.R
GAPIT.get.LL.R		GAPIT.get.LL.R
GAPIT.kinship.VanRaden.R		GAPIT.kinship.VanRaden.R
GAPIT.kinship.loiselle.R		GAPIT.kinship.loiselle.R
GAPIT.kinship.separation.R		GAPIT.kinship.separation.R
GAPIT.replaceNaN.R		GAPIT.replaceNaN.R
GAPIT.roc.R		GAPIT.roc.R
README		README
Source_Code.R		Source_Code.R
gapit_functions.txt		gapit_functions.txt

Repository files navigation

GAPIT: Genome Association and Prediction Integrated Tool
R files: The GAPIT functions
GAPIT.Builder.bat: Script to build gapit_functions.txt from all R files
gapit_functions.txt: The file containing all GAPIT functions. This file can be anchored at GAPIT website with source commend:
source("http://www.maizegenetics.net/images/stories/bioinformatics/GAPIT/gapit_functions.txt")

Help document, tutorial data and code are available:
http://www.maizegenetics.net/gapit