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79 Open 166 Closed
79 Open 166 Closed
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Issues list

The version of dask may need to be updated to be compatible with python 3.11.9.
#386 opened May 4, 2024 by WhenMelancholy
Update docs
#385 opened May 3, 2024 by WhenMelancholy
Issue installing scenicplus
#383 opened May 2, 2024 by jkanche
1
KeyError: 'Gene' in get_search_space
#381 opened May 2, 2024 by orian116
2
Trouble with run_pycistarget
#370 opened Apr 25, 2024 by mwetzel7
4
some questions about the function score_eRegulons
#369 opened Apr 25, 2024 by aaaaaaaaaayong
1
ModuleNotFoundError: No module named 'pyranges.pyranges_main'
#368 opened Apr 25, 2024 by janursa
6
Error in 'process_non_multiome_data' - imputed_acc_obj.feature_names contains regions not present in ACC_region_metadata
#367 opened Apr 24, 2024 by jesswhitts
4
Snakemake pipeline stalls on 'download_genome_annotations' question Further information is requested
#357 opened Apr 18, 2024 by jesswhitts
1
Linux installation Error question Further information is requested
#350 opened Apr 6, 2024 by kakaisi
3
export_pseudobulk() does not work question Further information is requested
#349 opened Apr 6, 2024 by Ashika-Jayanthy
2
An error related to "peak_calling" question Further information is requested
#343 opened Mar 30, 2024 by m03077yhtnt
1
TF_cistrome_correlation question Further information is requested
#341 opened Mar 29, 2024 by hanapac
4
Issue with loom file export function
#329 opened Mar 19, 2024 by SteveTur
5
Trajectory differentation arrows change each time I replot question Further information is requested
#324 opened Mar 13, 2024 by bhhlee
Update dockerfile please
#322 opened Mar 12, 2024 by AmosFong1
create_SCENICPLUS_object(multi_ome_mode = False),Keeping 0 cells for RNA and 0 for ATAC
#313 opened Mar 4, 2024 by wangdlpbr
13
Calculate path matrices for differentiation arrows (branched tracjectory) question Further information is requested
#312 opened Mar 2, 2024 by bhhlee
3
Generating a Umap with eRegulon AUC does not produce proper clusters question Further information is requested
#310 opened Feb 28, 2024 by redvoidling
2
run_scenicplus Skips Steps question Further information is requested
#304 opened Feb 20, 2024 by marck1198
run_scenicplus stops running midway question Further information is requested
#300 opened Feb 16, 2024 by peggiechien
13
Chromsizes URL
#296 opened Feb 7, 2024 by SteveTur
4
Mis-labelled motifs ?
#295 opened Feb 2, 2024 by JaanaB1
1
Perturbation: calculating shift along PCAs question Further information is requested
#291 opened Jan 23, 2024 by mason-sweat1
1
After running GSEA. I got stuck on getting the regulons. question Further information is requested
#288 opened Jan 18, 2024 by rogercasalsfr
4
ProTip! Exclude everything labeled bug with -label:bug.