add configure coverage using codecov

- add step to install package
- save report as xml file in the workflow runner
- add gha to post coverage report

.github/workflows/test.yml

@@ -76,6 +76,13 @@ jobs:
             }}
       - name: Install dependencies
         if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
-        run: poetry install --no-interaction --no-root --with dev
+        run: poetry install --no-interaction --no-root --with dev 
+      - name: Install library
+        run: poetry install --no-interaction --with dev
       - name: Perform unit testing
-        run: poetry run poe test
+        run: poetry run poe test_cov
+      - name: Upload coverage
+        uses: codecov/codecov-action@v3
+        with:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}        
+          files: ../cov.xml

pyproject.toml

@@ -24,6 +24,7 @@ poethepoet = "^0.20.0"
 yamlfix = "^1.10.0"
 pytest = "^7.3.1"
 hypothesis = "^6.76.0"
+pytest-cov = "^4.1.0"
 
 [build-system]
 requires = ["poetry-core"]
@@ -38,7 +39,11 @@ ruff = "ruff --fix afids_utils"
 ruff-check = "ruff afids_utils"
 quality = ["yamlfix", "isort", "black", "ruff"]
 quality-check = ["yamlfix-check", "isort-check", "black-check", "ruff-check"]
-test = "pytest --doctest-modules"
+test = "pytest --doctest-modules afids_utils/tests"
+test_cov = "pytest --doctest-modules --cov=afids_utils afids_utils/tests/ --cov-report xml:../cov.xml"
+
+[tool.coverage]
+omit = "afids_utils/tests/*"
 
 [tool.isort]
 profile = "black"