Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Make some ci fixes #279

Merged
merged 11 commits into from
Jun 14, 2021
Merged

Make some ci fixes #279

merged 11 commits into from
Jun 14, 2021

Commits on Jun 12, 2021

  1. fix broken spacing in container execution help message

    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    79a4dff View commit details
    Browse the repository at this point in the history

  2. remove inappropriate annex version rewrite 

    git-annex version 8 was previously difficult to install on some systems but now it is default
and indeed it is not trivial to install older versions:
afni/afni_ci_test_data#3

Forcing a git-annex repository version of 7 is no longer appropriate. It results in a difficult tangle:
afni/afni_ci_test_data#2
    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    76b8a4f View commit details
    Browse the repository at this point in the history

  3. make message for missing afnipy more helpful

    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    9a8c0aa View commit details
    Browse the repository at this point in the history

  4. turn off coverage testing 

    this reverts previous breakage of coverage functionality.
coverage functionality is now turned off for all circleci jobs
    @leej3
    leej3 committed Jun 12, 2021
    3 Configuration menu
    Copy the full SHA
    dfe88b8 View commit details
    Browse the repository at this point in the history

  5. add a fix to ignore the line of the log generating a spurious diff

    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    a3e3581 View commit details
    Browse the repository at this point in the history

  6. try to make errors for compiler configuration/setup more helpful

    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    863b18f View commit details
    Browse the repository at this point in the history

  7. add temporary fix for missing test data 

    these changes should be reverted once the CI test data has been updated...
currently the afni_ci_test_data repo has been updated but the files have
not been pushed to the afni server
    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    47888ee View commit details
    Browse the repository at this point in the history

  8. link thd_objs against omp target in cmake 

    required for thd_incorrelate which makes use of omp... and may not have correctly wrapped code blocks... not sure
    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    6db3667 View commit details
    Browse the repository at this point in the history

  9. Revert "link thd_objs against omp target in cmake" 

    This reverts commit 6db3667.
    @leej3
    leej3 committed Jun 12, 2021
    Configuration menu
    Copy the full SHA
    874f0a4 View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2021

  1. mac: turn of local signing

    @afni-rickr
    afni-rickr committed Jun 14, 2021
    Configuration menu
    Copy the full SHA
    0463e8f View commit details
    Browse the repository at this point in the history

  2. oh right, this is cmake complaining

    @afni-rickr
    afni-rickr committed Jun 14, 2021
    Configuration menu
    Copy the full SHA
    949c332 View commit details
    Browse the repository at this point in the history