Personal website and science notebook
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_drafts
_includes
_layouts
_plugins
_posts
assets/themes/afr
data
.gitignore
404.md
CNAME
Gemfile
README.md
Rakefile
_config.yml
about.md
archive.md
atom.xml
categories.md
index.md
labnotebook.md
links.md
pages.md
research.md
rss.xml
sitemap.txt
tags.md

README.md

Open Science notebook

A Jekyll powered notebook for open science. Uses Jekyll Bootstrap and is hosted on GitHub pages.

Install

sudo gem install jekyll # install jekyll (requires ruby)

USERNAME=afrendeiro # replace with your username
git clone https://github.com/plusjade/jekyll-bootstrap.git $USERNAME.github.io
cd $USERNAME.github.io
git remote set-url origin git@github.io:${USERNAME}/${USERNAME}.github.io.git
git push origin master

Edit the _config.yaml file with your information, social networks, licence, etc... and you're ready to go!

Create pages and post

rake page:new name="about"
rake post:new title="notebook"

or to make a draft and publish it only after:

rake draft:new title="new post"
rake draft:ready title="new post"

Run locally

rake preview

or

jekyll serve

served at http://0.0.0.0:4000/.

Themes

Go to http://themes.jekyllbootstrap.com/, choose a theme and install it:

rake theme:install git="https://github.com/jekyllbootstrap/theme-twitter.git"

Customize themes or create a new one from scratch.