rRPMM

R package to download and parse RPMM's metadata from RIKEN Plant Metabolome Metadatabase. This package is new and likely has bugs due to unexpected structures of some meta-data format. Please report bugs.

Installation

Install the devtools package and run:

install.packages("devtools")
devtools::install_github("afukushima/rRPMM", build_vignettes = TRUE)

Example

Download a list of studies with Arabidopsis

library(SPARQL)
library(rRPMM)
data_table <- RPMM_get_projects_list(taxonid = 3702) ## Arabidopsis

Getting URIs of all the raw data files in a Project from RPMM

res <- RPMM_get_rawdata_files(project = "RPMM0001")

License

The rRPMM package is free software; the GNU General Public License, version 3