The code includes:
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parsers for the PMC OAS and the TREC Genomics collection as well as tools to retrieve MeSH and article metadata from NCBI resources (package org.sciplore.citrec.dataimport)
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tools to statistically evaluate retrieval results using a top-k or a rank-based analysis (package org.sciplore.citrec.eval)
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implementations of similarity measures and code to calculate the MeSH-based gold standard (package org.sciplore.citrec.sim)