Scripts used to analyze the Allen Brain Atlases (adult human and mouse) using t-Stochastic Neighbor Embedding (tSNE). This analysis was published in:
Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings Methods, Volume 73, February 2015, Pages 79-89 http://www.sciencedirect.com/science/article/pii/S1046202314003211