Adding the codecov token directly in the ci/cd via a secreat to ensur…

…e that the coverage is properly displayed.

.coveragerc

@@ -1,7 +1,3 @@
-[run]
-source = src
-parallel = True
-
 [report]
 omit =
     *test*

.github/workflows/ci.yml

@@ -94,7 +94,7 @@ jobs:
           replace-with: ''
       - name: Run tox and codecov
         if: matrix.python == '3.9'
-        run: tox -e py${{ steps.tox.outputs.replaced }}-aiida_vasp -- --cov=./aiida_vasp --cov-append --cov-report=xml
+        run: tox -e py${{ steps.tox.outputs.replaced }}-aiida_vasp -- --cov=aiida_vasp --cov-append --cov-report=xml
       - name: Run tox
         if: matrix.python != '3.9'
         run: tox -e py${{ steps.tox.outputs.replaced }}-aiida_vasp
@@ -111,7 +111,9 @@ jobs:
         if: matrix.python == '3.9'
         uses: codecov/codecov-action@v4
         with:
+          token: ${{ secrets.CODECOV_TOKEN }}
           name: aiida-vasp
+          flags: pytests
           fail_ci_if_error: true
 
   validate-release-tag:

.github/workflows/nightly.yml

@@ -10,6 +10,19 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 45
     services:
+      postgres:
+        image: postgres:12
+        env:
+          POSTGRES_DB: test_lammps
+          POSTGRES_PASSWORD: ""
+          POSTGRES_HOST_AUTH_METHOD: trust
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+        ports:
+          - 5432:5432
       rabbitmq:
         image: rabbitmq:latest
         ports:
@@ -30,7 +43,6 @@ jobs:
           sudo .ci/enable_ssh_localhost.sh
           sudo apt install locate
           sudo updatedb
-          sudo apt install postgresql
       - name: Upgrade pip
         run: |
           pip install --upgrade pip