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Formalize the definition and import location of plugin factories #2498

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merged 4 commits into from Feb 18, 2019
Merged

Formalize the definition and import location of plugin factories #2498

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ac883e2
Move all test files to start with `test_` prefix
sphuber Feb 16, 2019
c7e9d18
Rename `authinfo` and `computer` backend modules to plurals
sphuber Feb 16, 2019
c5e7d89
Rename the `aiida.scheduler` and `aiida.transport` modules
sphuber Feb 16, 2019
7867877
Move all factories into `aiida.plugins.factories`
sphuber Feb 16, 2019
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2 changes: 1 addition & 1 deletion .ci/polish/lib/template/base.tpl
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@@ -1,11 +1,11 @@
# -*- coding: utf-8 -*-
from numpy import prod
from copy import deepcopy
from aiida.orm import CalculationFactory
from aiida.orm import Code
from aiida.orm.nodes.data.int import Int
from aiida.orm.nodes.data.str import Str
from aiida.orm.nodes.data.parameter import ParameterData
from aiida.plugins import CalculationFactory
from aiida.work.run import submit
from aiida.work.workchain import WorkChain, if_, while_, append_, ToContext
from aiida.work import calcfunction
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3 changes: 2 additions & 1 deletion .ci/test_daemon.py
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Expand Up @@ -20,11 +20,12 @@
from aiida.common import exceptions
from aiida.manage.caching import enable_caching
from aiida.daemon.client import get_daemon_client
from aiida.orm import Code, CalculationFactory, DataFactory, load_node
from aiida.orm import Code, load_node
from aiida.orm.nodes.data.int import Int
from aiida.orm.nodes.data.str import Str
from aiida.orm.nodes.data.list import List
from aiida.orm import CalcJobNode
from aiida.plugins import CalculationFactory, DataFactory
from aiida.work.launch import run_get_node, submit
from aiida.work.persistence import ObjectLoader
from workchains import (
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3 changes: 2 additions & 1 deletion .ci/test_fixtures.py
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Expand Up @@ -59,7 +59,8 @@ def test_create_use_destroy_profile(self):
self.assertEqual(AIIDA_CONFIG_FOLDER, self.fixture_manager.config_dir, msg=output)
self.assertTrue(is_dbenv_loaded())

from aiida.orm import DataFactory, load_node
from aiida.orm import load_node
from aiida.plugins import DataFactory
data = DataFactory('parameter')(dict={'key': 'value'})
data.store()
data_pk = data.pk
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2 changes: 1 addition & 1 deletion .ci/test_plugin_testcase.py
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Expand Up @@ -48,7 +48,7 @@ def get_data():
"""
Return some ParameterData
"""
from aiida.orm.utils import DataFactory
from aiida.plugins import DataFactory
data = DataFactory('parameter')(dict={'data': 'test'})
data.store()
return data
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115 changes: 49 additions & 66 deletions .pre-commit-config.yaml
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Expand Up @@ -30,11 +30,11 @@
aiida/backends/djsite/db/migrations/0017_drop_dbcalcstate.py|
aiida/backends/djsite/db/migrations/__init__.py|
aiida/backends/djsite/db/models.py|
aiida/backends/djsite/db/subtests/migrations.py|
aiida/backends/djsite/db/subtests/generic.py|
aiida/backends/djsite/db/subtests/test_migrations.py|
aiida/backends/djsite/db/subtests/test_generic.py|
aiida/backends/djsite/db/subtests/__init__.py|
aiida/backends/djsite/db/subtests/nodes.py|
aiida/backends/djsite/db/subtests/query.py|
aiida/backends/djsite/db/subtests/test_nodes.py|
aiida/backends/djsite/db/subtests/test_query.py|
aiida/backends/djsite/globalsettings.py|
aiida/backends/djsite/__init__.py|
aiida/backends/djsite/manage.py|
Expand Down Expand Up @@ -76,21 +76,21 @@
aiida/backends/sqlalchemy/models/utils.py|
aiida/backends/sqlalchemy/models/workflow.py|
aiida/backends/sqlalchemy/queries.py|
aiida/backends/sqlalchemy/tests/generic.py|
aiida/backends/sqlalchemy/tests/test_generic.py|
aiida/backends/sqlalchemy/tests/__init__.py|
aiida/backends/sqlalchemy/tests/nodes.py|
aiida/backends/sqlalchemy/tests/query.py|
aiida/backends/sqlalchemy/tests/schema.py|
aiida/backends/sqlalchemy/tests/session.py|
aiida/backends/sqlalchemy/tests/test_nodes.py|
aiida/backends/sqlalchemy/tests/test_query.py|
aiida/backends/sqlalchemy/tests/test_schema.py|
aiida/backends/sqlalchemy/tests/test_session.py|
aiida/backends/sqlalchemy/tests/testbase.py|
aiida/backends/sqlalchemy/tests/utils.py|
aiida/backends/sqlalchemy/tests/test_utils.py|
aiida/backends/sqlalchemy/transition_06dj_to_07sqla.py|
aiida/backends/sqlalchemy/utils.py|
aiida/backends/testbase.py|
aiida/backends/testimplbase.py|
aiida/backends/tests/backup_script.py|
aiida/backends/tests/backup_setup_script.py|
aiida/backends/tests/base_dataclasses.py|
aiida/backends/tests/test_backup_script.py|
aiida/backends/tests/test_backup_setup_script.py|
aiida/backends/tests/test_base_dataclasses.py|
aiida/backends/tests/cmdline/commands/test_calculation.py|
aiida/backends/tests/cmdline/commands/test_code.py|
aiida/backends/tests/cmdline/commands/test_comment.py|
Expand All @@ -101,33 +101,27 @@
aiida/backends/tests/cmdline/commands/test_node.py|
aiida/backends/tests/cmdline/commands/test_user.py|
aiida/backends/tests/cmdline/commands/test_work.py|
aiida/backends/tests/common/test_datastructures.py|
aiida/backends/tests/computer.py|
aiida/backends/tests/control/test_computer_ctrl.py|
aiida/backends/tests/daemon.py|
aiida/backends/tests/test_computer.py|
aiida/backends/tests/daemon/test_client.py|
aiida/backends/tests/dataclasses.py|
aiida/backends/tests/dbimporters.py|
aiida/backends/tests/example_helpers.py|
aiida/backends/tests/export_and_import.py|
aiida/backends/tests/generic.py|
aiida/backends/tests/test_dataclasses.py|
aiida/backends/tests/test_dbimporters.py|
aiida/backends/tests/test_export_and_import.py|
aiida/backends/tests/test_generic.py|
aiida/backends/tests/__init__.py|
aiida/backends/tests/nodes.py|
aiida/backends/tests/orm/data/frozendict.py|
aiida/backends/tests/orm/data/remote.py|
aiida/backends/tests/orm/utils/loaders.py|
aiida/backends/tests/parsers.py|
aiida/backends/tests/query.py|
aiida/backends/tests/tcodexporter.py|
aiida/backends/tests/test_nodes.py|
aiida/backends/tests/orm/data/test_frozendict.py|
aiida/backends/tests/orm/data/test_remote.py|
aiida/backends/tests/orm/utils/test_loaders.py|
aiida/backends/tests/test_parsers.py|
aiida/backends/tests/test_query.py|
aiida/backends/tests/test_tcodexporter.py|
aiida/backends/tests/test_caching_config.py|
aiida/backends/tests/test_plugin_loader.py|
aiida/backends/tests/utils/fixtures.py|
aiida/backends/tests/work/class_loader.py|
aiida/backends/tests/work/daemon.py|
aiida/backends/tests/work/job_processes.py|
aiida/backends/tests/work/persistence.py|
aiida/backends/tests/work/process.py|
aiida/backends/tests/work/run.py|
aiida/backends/tests/work/test_class_loader.py|
aiida/backends/tests/work/test_daemon.py|
aiida/backends/tests/work/test_persistence.py|
aiida/backends/tests/work/test_process.py|
aiida/backends/tests/work/test_run.py|
aiida/backends/tests/work/test_futures.py|
aiida/backends/tests/work/test_launch.py|
aiida/backends/tests/work/test_process_builder.py|
Expand All @@ -136,25 +130,15 @@
aiida/backends/tests/work/test_runners.py|
aiida/backends/tests/work/test_transport.py|
aiida/backends/tests/work/test_utils.py|
aiida/backends/tests/work/utils.py|
aiida/backends/tests/work/work_chain.py|
aiida/backends/tests/work/test_utils.py|
aiida/backends/tests/work/test_work_chain.py|
aiida/backends/utils.py|
aiida/common/datastructures.py|
aiida/daemon/execmanager.py|
aiida/manage/backup/backup_base.py|
aiida/orm/autogroup.py|
aiida/orm/backend.py|
aiida/orm/querybuilder.py|
aiida/orm/implementation/django/authinfo.py|
aiida/orm/implementation/django/backend.py|
aiida/orm/implementation/django/computer.py|
aiida/orm/implementation/django/__init__.py|
aiida/orm/implementation/django/utils.py|
aiida/orm/implementation/sqlalchemy/authinfo.py|
aiida/orm/implementation/sqlalchemy/backend.py|
aiida/orm/implementation/sqlalchemy/computer.py|
aiida/orm/implementation/sqlalchemy/__init__.py|
aiida/orm/implementation/sqlalchemy/querytool.py|
aiida/orm/implementation/sqlalchemy/utils.py|
aiida/orm/__init__.py|
aiida/orm/importexport.py|
Expand Down Expand Up @@ -192,20 +176,19 @@
aiida/plugins/info.py|
aiida/plugins/registry.py|
aiida/plugins/utils.py|
aiida/scheduler/datastructures.py|
aiida/scheduler/__init__.py|
aiida/scheduler/plugins/direct.py|
aiida/scheduler/plugins/lsf.py|
aiida/scheduler/plugins/pbsbaseclasses.py|
aiida/scheduler/plugins/pbsbaseclasses.py|
aiida/scheduler/plugins/sge.py|
aiida/scheduler/plugins/slurm.py|
aiida/scheduler/plugins/test_direct.py|
aiida/scheduler/plugins/test_lsf.py|
aiida/scheduler/plugins/test_pbspro.py|
aiida/scheduler/plugins/test_sge.py|
aiida/scheduler/plugins/test_slurm.py|
aiida/scheduler/plugins/test_torque.py|
aiida/schedulers/datastructures.py|
aiida/schedulers/plugins/direct.py|
aiida/schedulers/plugins/lsf.py|
aiida/schedulers/plugins/pbsbaseclasses.py|
aiida/schedulers/plugins/pbsbaseclasses.py|
aiida/schedulers/plugins/sge.py|
aiida/schedulers/plugins/slurm.py|
aiida/schedulers/plugins/test_direct.py|
aiida/schedulers/plugins/test_lsf.py|
aiida/schedulers/plugins/test_pbspro.py|
aiida/schedulers/plugins/test_sge.py|
aiida/schedulers/plugins/test_slurm.py|
aiida/schedulers/plugins/test_torque.py|
aiida/settings.py|
aiida/sphinxext/tests/conftest.py|
aiida/sphinxext/tests/test_workchain.py|
Expand Down Expand Up @@ -234,10 +217,10 @@
aiida/tools/dbimporters/plugins/pcod.py|
aiida/tools/dbimporters/plugins/tcod.py|
aiida/tools/__init__.py|
aiida/transport/plugins/ssh.py|
aiida/transport/plugins/test_all_plugins.py|
aiida/transport/plugins/test_local.py|
aiida/transport/plugins/test_ssh.py|
aiida/transports/plugins/ssh.py|
aiida/transports/plugins/test_all_plugins.py|
aiida/transports/plugins/test_local.py|
aiida/transports/plugins/test_ssh.py|
aiida/work/__init__.py|
aiida/work/job_processes.py|
utils/create_requirements.py|
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0 aiida/backends/djsite/db/subtests/generic.py → ...ckends/djsite/db/subtests/test_generic.py
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0 ...backends/djsite/db/subtests/migrations.py → ...nds/djsite/db/subtests/test_migrations.py
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0 aiida/backends/djsite/db/subtests/nodes.py → ...backends/djsite/db/subtests/test_nodes.py
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0 aiida/backends/djsite/db/subtests/query.py → ...backends/djsite/db/subtests/test_query.py
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2 changes: 1 addition & 1 deletion aiida/backends/sqlalchemy/tests/generic.py → ...backends/sqlalchemy/tests/test_generic.py
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Expand Up @@ -64,7 +64,7 @@ class TestGroupsSqla(AiidaTestCase):
def setUp(self):
from aiida.orm.implementation import sqlalchemy as sqla
super(TestGroupsSqla, self).setUp()
self.assertIsInstance(self.backend, sqla.SqlaBackend)
self.assertIsInstance(self.backend, sqla.backend.SqlaBackend)

def test_query(self):
"""
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4 changes: 2 additions & 2 deletions ...a/backends/sqlalchemy/tests/migrations.py → ...kends/sqlalchemy/tests/test_migrations.py
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Expand Up @@ -24,7 +24,7 @@
from aiida.backends import sqlalchemy as sa
from aiida.backends.sqlalchemy import utils
from aiida.backends.sqlalchemy.models.base import Base
from aiida.backends.sqlalchemy.tests.utils import new_database
from aiida.backends.sqlalchemy.tests.test_utils import new_database
from aiida.backends.testbase import AiidaTestCase
from aiida.orm import load_node

Expand Down Expand Up @@ -951,7 +951,7 @@ def setUpBeforeMigration(self):
try:
session = Session(connection.engine)
import numpy
from aiida.plugins.factory import DataFactory
from aiida.plugins import DataFactory

TrajectoryData = DataFactory('array.trajectory') # pylint: disable=invalid-name
symbols = numpy.array(['H', 'O', 'C'])
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0 aiida/backends/sqlalchemy/tests/nodes.py → ...a/backends/sqlalchemy/tests/test_nodes.py
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0 aiida/backends/sqlalchemy/tests/query.py → ...a/backends/sqlalchemy/tests/test_query.py
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0 aiida/backends/sqlalchemy/tests/schema.py → .../backends/sqlalchemy/tests/test_schema.py
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0 aiida/backends/sqlalchemy/tests/session.py → ...backends/sqlalchemy/tests/test_session.py
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0 aiida/backends/sqlalchemy/tests/utils.py → ...a/backends/sqlalchemy/tests/test_utils.py
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84 changes: 42 additions & 42 deletions aiida/backends/tests/__init__.py
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Expand Up @@ -17,34 +17,34 @@

db_test_list = {
BACKEND_DJANGO: {
'generic': ['aiida.backends.djsite.db.subtests.generic'],
'nodes': ['aiida.backends.djsite.db.subtests.nodes'],
'migrations': ['aiida.backends.djsite.db.subtests.migrations'],
'query': ['aiida.backends.djsite.db.subtests.query'],
'generic': ['aiida.backends.djsite.db.subtests.test_generic'],
'nodes': ['aiida.backends.djsite.db.subtests.test_nodes'],
'migrations': ['aiida.backends.djsite.db.subtests.test_migrations'],
'query': ['aiida.backends.djsite.db.subtests.test_query'],
},
BACKEND_SQLA: {
'generic': ['aiida.backends.sqlalchemy.tests.generic'],
'nodes': ['aiida.backends.sqlalchemy.tests.nodes'],
'query': ['aiida.backends.sqlalchemy.tests.query'],
'session': ['aiida.backends.sqlalchemy.tests.session'],
'schema': ['aiida.backends.sqlalchemy.tests.schema'],
'migrations': ['aiida.backends.sqlalchemy.tests.migrations'],
'generic': ['aiida.backends.sqlalchemy.tests.test_generic'],
'nodes': ['aiida.backends.sqlalchemy.tests.test_nodes'],
'query': ['aiida.backends.sqlalchemy.tests.test_query'],
'session': ['aiida.backends.sqlalchemy.tests.test_session'],
'schema': ['aiida.backends.sqlalchemy.tests.test_schema'],
'migrations': ['aiida.backends.sqlalchemy.tests.test_migrations'],
},
# Must be always defined (in the worst case, an empty dict)
'common': {
'generic': ['aiida.backends.tests.generic'],
'nodes': ['aiida.backends.tests.nodes'],
'base_dataclasses': ['aiida.backends.tests.base_dataclasses'],
'dataclasses': ['aiida.backends.tests.dataclasses'],
'dbimporters': ['aiida.backends.tests.dbimporters'],
'export_and_import': ['aiida.backends.tests.export_and_import'],
'parsers': ['aiida.backends.tests.parsers'],
'tcodexporter': ['aiida.backends.tests.tcodexporter'],
'query': ['aiida.backends.tests.query'],
'calculation_node': ['aiida.backends.tests.calculation_node'],
'backup_script': ['aiida.backends.tests.backup_script'],
'backup_setup_script': ['aiida.backends.tests.backup_setup_script'],
'restapi': ['aiida.backends.tests.restapi'],
'generic': ['aiida.backends.tests.test_generic'],
'nodes': ['aiida.backends.tests.test_nodes'],
'base_dataclasses': ['aiida.backends.tests.test_base_dataclasses'],
'dataclasses': ['aiida.backends.tests.test_dataclasses'],
'dbimporters': ['aiida.backends.tests.test_dbimporters'],
'export_and_import': ['aiida.backends.tests.test_export_and_import'],
'parsers': ['aiida.backends.tests.test_parsers'],
'tcodexporter': ['aiida.backends.tests.test_tcodexporter'],
'query': ['aiida.backends.tests.test_query'],
'calculation_node': ['aiida.backends.tests.test_calculation_node'],
'backup_script': ['aiida.backends.tests.test_backup_script'],
'backup_setup_script': ['aiida.backends.tests.test_backup_setup_script'],
'restapi': ['aiida.backends.tests.test_restapi'],
'cmdline.commands.calcjob': ['aiida.backends.tests.cmdline.commands.test_calcjob'],
'cmdline.commands.calculation': ['aiida.backends.tests.cmdline.commands.test_calculation'],
'cmdline.commands.code': ['aiida.backends.tests.cmdline.commands.test_code'],
Expand Down Expand Up @@ -89,38 +89,38 @@
'manage.configuration.options.': ['aiida.backends.tests.manage.configuration.test_options'],
'manage.configuration.profile.': ['aiida.backends.tests.manage.configuration.test_profile'],
'manage.external.postgres.': ['aiida.backends.tests.manage.external.test_postgres'],
'orm.authinfo': ['aiida.backends.tests.orm.authinfo'],
'orm.comments': ['aiida.backends.tests.orm.comments'],
'orm.computer': ['aiida.backends.tests.computer'],
'orm.data.frozendict': ['aiida.backends.tests.orm.data.frozendict'],
'orm.data.remote': ['aiida.backends.tests.orm.data.remote'],
'orm.data.upf': ['aiida.backends.tests.orm.data.upf'],
'orm.entities': ['aiida.backends.tests.orm.entities'],
'orm.groups': ['aiida.backends.tests.orm.groups'],
'orm.authinfos': ['aiida.backends.tests.orm.test_authinfos'],
'orm.comments': ['aiida.backends.tests.orm.test_comments'],
'orm.computer': ['aiida.backends.tests.test_computer'],
'orm.data.frozendict': ['aiida.backends.tests.orm.data.test_frozendict'],
'orm.data.remote': ['aiida.backends.tests.orm.data.test_remote'],
'orm.data.upf': ['aiida.backends.tests.orm.data.test_upf'],
'orm.entities': ['aiida.backends.tests.orm.test_entities'],
'orm.groups': ['aiida.backends.tests.orm.test_groups'],
'orm.implementation.backend': ['aiida.backends.tests.orm.implementation.test_backend'],
'orm.implementation.nodes': ['aiida.backends.tests.orm.implementation.test_nodes'],
'orm.logs': ['aiida.backends.tests.orm.logs'],
'orm.mixins': ['aiida.backends.tests.orm.mixins'],
'orm.logs': ['aiida.backends.tests.orm.test_logs'],
'orm.mixins': ['aiida.backends.tests.orm.test_mixins'],
'orm.node': ['aiida.backends.tests.orm.node.test_node'],
'orm.utils.calcjob': ['aiida.backends.tests.orm.utils.calcjob'],
'orm.utils.node': ['aiida.backends.tests.orm.utils.node'],
'orm.utils.loaders': ['aiida.backends.tests.orm.utils.loaders'],
'orm.utils.calcjob': ['aiida.backends.tests.orm.utils.test_calcjob'],
'orm.utils.node': ['aiida.backends.tests.orm.utils.test_node'],
'orm.utils.loaders': ['aiida.backends.tests.orm.utils.test_loaders'],
'work.calcfunctions': ['aiida.backends.tests.work.test_calcfunctions'],
'work.class_loader': ['aiida.backends.tests.work.class_loader'],
'work.daemon': ['aiida.backends.tests.work.daemon'],
'work.class_loader': ['aiida.backends.tests.work.test_class_loader'],
'work.daemon': ['aiida.backends.tests.work.test_daemon'],
'work.futures': ['aiida.backends.tests.work.test_futures'],
'work.launch': ['aiida.backends.tests.work.test_launch'],
'work.persistence': ['aiida.backends.tests.work.persistence'],
'work.process': ['aiida.backends.tests.work.process'],
'work.persistence': ['aiida.backends.tests.work.test_persistence'],
'work.process': ['aiida.backends.tests.work.test_process'],
'work.process_builder': ['aiida.backends.tests.work.test_process_builder'],
'work.process_function': ['aiida.backends.tests.work.test_process_function'],
'work.process_spec': ['aiida.backends.tests.work.test_process_spec'],
'work.rmq': ['aiida.backends.tests.work.test_rmq'],
'work.run': ['aiida.backends.tests.work.run'],
'work.run': ['aiida.backends.tests.work.test_run'],
'work.runners': ['aiida.backends.tests.work.test_runners'],
'work.transport': ['aiida.backends.tests.work.test_transport'],
'work.utils': ['aiida.backends.tests.work.test_utils'],
'work.work_chain': ['aiida.backends.tests.work.work_chain'],
'work.work_chain': ['aiida.backends.tests.work.test_work_chain'],
'work.workfunctions': ['aiida.backends.tests.work.test_workfunctions'],
'plugin_loader': ['aiida.backends.tests.test_plugin_loader'],
'caching_config': ['aiida.backends.tests.test_caching_config'],
Expand Down
3 changes: 2 additions & 1 deletion aiida/backends/tests/cmdline/commands/test_calcjob.py
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Expand Up @@ -38,9 +38,10 @@ def setUpClass(cls, *args, **kwargs):
super(TestVerdiCalculation, cls).setUpClass(*args, **kwargs)
from aiida.backends.tests.utils.fixtures import import_archive_fixture
from aiida.common.links import LinkType
from aiida.orm import CalculationFactory, Data
from aiida.orm import Data
from aiida.orm import CalcJobNode
from aiida.orm.nodes.data.parameter import ParameterData
from aiida.plugins import CalculationFactory
from aiida.work.processes import ProcessState
from aiida import orm

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3 changes: 2 additions & 1 deletion aiida/backends/tests/cmdline/commands/test_calculation.py
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Expand Up @@ -35,9 +35,10 @@ def setUpClass(cls, *args, **kwargs):
super(TestVerdiCalculation, cls).setUpClass(*args, **kwargs)
from aiida.backends.tests.utils.fixtures import import_archive_fixture
from aiida.common.links import LinkType
from aiida.orm import CalculationFactory, Data
from aiida.orm import Data
from aiida.orm import CalcJobNode
from aiida.orm.nodes.data.parameter import ParameterData
from aiida.plugins import CalculationFactory
from aiida.work.processes import ProcessState
from aiida import orm

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0 aiida/backends/tests/orm/data/frozendict.py → ...ackends/tests/orm/data/test_frozendict.py
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