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First steps to make protocols scheduler agnostic #1011

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Addresses #1010

The current protocols implicitly rely on the Slurm scheduler, thus causing errors when users try to use ad different one, e.g. SGE as described in the issue.
Here, the documentation of the get_builder_from_protocol method is extended to make the users aware of this behavior. Moreover, a warning is added in case no explicit resources are provided via the options argument, as this will cause errors in future versions.

@sphuber @mbercx Suggestions for a different phrasing or place where to put the additional documentation are very welcome. Moreover, I used a UserWarning because a DeprecationWarning somehow didn't appear. I'm not sure whether they are filtered at some point?

@t-reents t-reents force-pushed the fix/slurm_independent_protocols branch from 844efbb to 142b74c Compare February 19, 2024 10:30
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sphuber commented Feb 19, 2024

@sphuber @mbercx Suggestions for a different phrasing or place where to put the additional documentation are very welcome.

It would be great to also add this to the documentation in addition to the docstrings. I noticed that the get_builder_from_protocol functionality isn't really documented though.

Moreover, I used a UserWarning because a DeprecationWarning somehow didn't appear. I'm not sure whether they are filtered at some point?

Deprecation warnings are ignored by default in Python (https://docs.python.org/3/library/exceptions.html#DeprecationWarning). A user has to enable them manually to see them. I think a UserWarning is fine for now as an alternative.

The current protocols implicitly rely on the `Slurm` scheduler by specifying the number of machines
in `metadata.options.resources`. This can cause problems when using different schedulers
in combination with `get_builder_from_protocol`. Here, we add this information to the documentation
and add a warning that the options need to be explicitly specified in future versions.
@t-reents t-reents force-pushed the fix/slurm_independent_protocols branch from 142b74c to e5f1148 Compare May 16, 2024 08:28
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Hi @sphuber ! Sorry for picking this up just now.

I added a general description of the get_builder_from_protocol in the How to - Workflows section. To be honest, I wasn't 100% sure where to put it, but since it's a general remark about the workflows, I decided to put it there. Happy to discuss/adjust this.

Moreover, I realized that the issue of the protocols depending on SLURM also applies to the other workflows, not just the pw ones. Hence, I also added the warning to those.

In addition to the previous changes to the `pw` `WorkChain`s, this commit adds a warning to all the other `WorkChain`s that provide the `get_builder_from_protcol` method.
This commit adds some general remarks about the `get_builder_from_protocol` methods in the `How to - Workflows` section.
@t-reents t-reents force-pushed the fix/slurm_independent_protocols branch from 538bc59 to 300e4cc Compare May 16, 2024 08:45
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