move latex source (#14)

move latex source to assets subfolder + fix strange space to make it compile
aiidateam · Apr 30, 2019 · 583bf3b · 583bf3b
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Showing 49 changed files with 15 additions and 9 deletions.
diff --git a/latex/.gitignore → docs/assets/2018_PRACE_MaX/latex/.gitignore b/latex/.gitignore → docs/assets/2018_PRACE_MaX/latex/.gitignore
diff --git a/latex/.travis.yml → docs/assets/2018_PRACE_MaX/latex/.travis.yml b/latex/.travis.yml → docs/assets/2018_PRACE_MaX/latex/.travis.yml
diff --git a/latex/AiiDA_tutorial.tex → ...s/2018_PRACE_MaX/latex/AiiDA_tutorial.tex b/latex/AiiDA_tutorial.tex → ...s/2018_PRACE_MaX/latex/AiiDA_tutorial.tex
diff --git a/latex/AiiDA_tutorial_addition.tex → ...ACE_MaX/latex/AiiDA_tutorial_addition.tex b/latex/AiiDA_tutorial_addition.tex → ...ACE_MaX/latex/AiiDA_tutorial_addition.tex
diff --git a/latex/AiiDA_tutorial_online.tex → ...PRACE_MaX/latex/AiiDA_tutorial_online.tex b/latex/AiiDA_tutorial_online.tex → ...PRACE_MaX/latex/AiiDA_tutorial_online.tex
diff --git a/latex/Makefile → docs/assets/2018_PRACE_MaX/latex/Makefile b/latex/Makefile → docs/assets/2018_PRACE_MaX/latex/Makefile
@@ -2,7 +2,7 @@ deps:=$(wildcard sections/*.tex)
 
 temp_files = $(shell find . -name "*aux" -o -name "*log" -o -name "*toc" -o -name "*out" -o -name "*-clean.tex" -o -name "*.db" -o -name "*.md")
 
-all: $(patsubst %.tex, %.pdf, $(wildcard *.tex))
+pdflatex: $(patsubst %.tex, %.pdf, $(wildcard *.tex))
 
 %.pdf: %.tex $(deps)
 	pdflatex ${LATEX_INTERACTION_MODE} $< && pdflatex $< && pdflatex $<
@@ -13,6 +13,9 @@ all: $(patsubst %.tex, %.pdf, $(wildcard *.tex))
 clean:
 	rm -f ${temp_files}
 
+distclean: clean
+	rm -f AiiDA_tutorial.pdf AiiDA_tutorial_online.pdf 
+
 markdown: $(deps)
 	./de-macro.py AiiDA_tutorial.tex
 	pandoc -s --filter pandocfilter.py AiiDA_tutorial-clean.tex -t markdown_github-fenced_code_attributes -o AiiDA_tutorial-clean.md
@@ -22,5 +25,3 @@ rst: $(deps)
 	pandoc -s --filter pandocfilter.py AiiDA_tutorial-clean.tex -t rst -o AiiDA_tutorial-clean.rst
 
 
-distclean: clean
-	rm -f AiiDA_tutorial.pdf AiiDA_tutorial_online.pdf 
diff --git a/latex/README.md → docs/assets/2018_PRACE_MaX/latex/README.md b/latex/README.md → docs/assets/2018_PRACE_MaX/latex/README.md
@@ -5,6 +5,12 @@ This folder contains the LaTeX source for the 2018 PRACE-MaX AiiDA tutorial.
 **Note:** The LaTeX source is kept only for historical reasons
 and has been replaced by the markdown/rst based version.
 
+## Compiling LaTeX source
+
+```
+make
+```
+
 ## Export to markdown/rst
 
 The LaTeX source can be converted as follows:

diff --git a/latex/aiidatutorial.kilepr → ...2018_PRACE_MaX/latex/aiidatutorial.kilepr b/latex/aiidatutorial.kilepr → ...2018_PRACE_MaX/latex/aiidatutorial.kilepr
diff --git a/latex/de-macro.py → docs/assets/2018_PRACE_MaX/latex/de-macro.py b/latex/de-macro.py → docs/assets/2018_PRACE_MaX/latex/de-macro.py
diff --git a/latex/img/convergence_pressure.png → ...CE_MaX/latex/img/convergence_pressure.png b/latex/img/convergence_pressure.png → ...CE_MaX/latex/img/convergence_pressure.png
diff --git a/latex/img/graph/graph-full.pdf → ..._PRACE_MaX/latex/img/graph/graph-full.pdf b/latex/img/graph/graph-full.pdf → ..._PRACE_MaX/latex/img/graph/graph-full.pdf
diff --git a/latex/img/graph/graph-inputonly.pdf → ...E_MaX/latex/img/graph/graph-inputonly.pdf b/latex/img/graph/graph-inputonly.pdf → ...E_MaX/latex/img/graph/graph-inputonly.pdf
diff --git a/latex/img/graph/graph.svg → .../2018_PRACE_MaX/latex/img/graph/graph.svg b/latex/img/graph/graph.svg → .../2018_PRACE_MaX/latex/img/graph/graph.svg
diff --git a/...mg/magnetization_smearing_perovskites.pdf → ...mg/magnetization_smearing_perovskites.pdf b/...mg/magnetization_smearing_perovskites.pdf → ...mg/magnetization_smearing_perovskites.pdf
diff --git a/...s_perovskites_allpseudo_Gaussian_0p02.eps → ...s_perovskites_allpseudo_Gaussian_0p02.eps b/...s_perovskites_allpseudo_Gaussian_0p02.eps → ...s_perovskites_allpseudo_Gaussian_0p02.eps
diff --git a/...s_perovskites_allpseudo_Gaussian_0p02.png → ...s_perovskites_allpseudo_Gaussian_0p02.png b/...s_perovskites_allpseudo_Gaussian_0p02.png → ...s_perovskites_allpseudo_Gaussian_0p02.png
diff --git a/latex/img/qb_example_1.png → ...2018_PRACE_MaX/latex/img/qb_example_1.png b/latex/img/qb_example_1.png → ...2018_PRACE_MaX/latex/img/qb_example_1.png
diff --git a/latex/img/qb_example_2.png → ...2018_PRACE_MaX/latex/img/qb_example_2.png b/latex/img/qb_example_2.png → ...2018_PRACE_MaX/latex/img/qb_example_2.png
diff --git a/...aring_energy_vs_bandgap_Gaussian_0p02.eps → ...aring_energy_vs_bandgap_Gaussian_0p02.eps b/...aring_energy_vs_bandgap_Gaussian_0p02.eps → ...aring_energy_vs_bandgap_Gaussian_0p02.eps
diff --git a/...aring_energy_vs_bandgap_Gaussian_0p02.png → ...aring_energy_vs_bandgap_Gaussian_0p02.png b/...aring_energy_vs_bandgap_Gaussian_0p02.png → ...aring_energy_vs_bandgap_Gaussian_0p02.png
diff --git a/...s_perovskites_allpseudo_Gaussian_0p02.eps → ...s_perovskites_allpseudo_Gaussian_0p02.eps b/...s_perovskites_allpseudo_Gaussian_0p02.eps → ...s_perovskites_allpseudo_Gaussian_0p02.eps
diff --git a/...s_perovskites_allpseudo_Gaussian_0p02.png → ...s_perovskites_allpseudo_Gaussian_0p02.png b/...s_perovskites_allpseudo_Gaussian_0p02.png → ...s_perovskites_allpseudo_Gaussian_0p02.png
diff --git a/latex/img/workfunctions.pdf → ...018_PRACE_MaX/latex/img/workfunctions.pdf b/latex/img/workfunctions.pdf → ...018_PRACE_MaX/latex/img/workfunctions.pdf
diff --git a/latex/img/workfunctions.svg → ...018_PRACE_MaX/latex/img/workfunctions.svg b/latex/img/workfunctions.svg → ...018_PRACE_MaX/latex/img/workfunctions.svg
diff --git a/latex/pandocfilter.py → ...sets/2018_PRACE_MaX/latex/pandocfilter.py b/latex/pandocfilter.py → ...sets/2018_PRACE_MaX/latex/pandocfilter.py
diff --git a/latex/requirements.txt → ...ets/2018_PRACE_MaX/latex/requirements.txt b/latex/requirements.txt → ...ets/2018_PRACE_MaX/latex/requirements.txt
diff --git a/latex/sections/1_1_ssh_connection.tex → ...MaX/latex/sections/1_1_ssh_connection.tex b/latex/sections/1_1_ssh_connection.tex → ...MaX/latex/sections/1_1_ssh_connection.tex
diff --git a/latex/sections/1_2_preparation.tex → ...CE_MaX/latex/sections/1_2_preparation.tex b/latex/sections/1_2_preparation.tex → ...CE_MaX/latex/sections/1_2_preparation.tex
diff --git a/latex/sections/2_verdi_graphs.tex → ...ACE_MaX/latex/sections/2_verdi_graphs.tex b/latex/sections/2_verdi_graphs.tex → ...ACE_MaX/latex/sections/2_verdi_graphs.tex
diff --git a/latex/sections/3_verdi_shell_and_orm.tex → .../latex/sections/3_verdi_shell_and_orm.tex b/latex/sections/3_verdi_shell_and_orm.tex → .../latex/sections/3_verdi_shell_and_orm.tex
@@ -215,7 +215,7 @@ \subsubsection{Structures}
 converted directly from ASE~\cite{ref:ASE} structures using\footnote{We purposefully do not provide advanced commands
 for crystal structure manipulation in AiiDA, because python packages that accomplish such tasks
 already exist (such as ASE or pymatgen).}
-\begin{pythoncommand}	
+\begin{pythoncommand}
  from ase.lattice.spacegroup import crystal
  ase_structure = crystal('Si', [(0,0,0)], spacegroup=227,
                  cellpar=[alat, alat, alat, 90, 90, 90],primitive_cell=True)

diff --git a/latex/sections/4_qe_submission.tex → ...CE_MaX/latex/sections/4_qe_submission.tex b/latex/sections/4_qe_submission.tex → ...CE_MaX/latex/sections/4_qe_submission.tex
diff --git a/latex/sections/5_querybuilder.tex → ...ACE_MaX/latex/sections/5_querybuilder.tex b/latex/sections/5_querybuilder.tex → ...ACE_MaX/latex/sections/5_querybuilder.tex
diff --git a/latex/sections/5_querybuilder_jupyter.tex → ...latex/sections/5_querybuilder_jupyter.tex b/latex/sections/5_querybuilder_jupyter.tex → ...latex/sections/5_querybuilder_jupyter.tex
diff --git a/latex/sections/6_workflows.tex → ..._PRACE_MaX/latex/sections/6_workflows.tex b/latex/sections/6_workflows.tex → ..._PRACE_MaX/latex/sections/6_workflows.tex
diff --git a/latex/sections/7_bandstructure.tex → ...CE_MaX/latex/sections/7_bandstructure.tex b/latex/sections/7_bandstructure.tex → ...CE_MaX/latex/sections/7_bandstructure.tex
diff --git a/latex/sections/8_computer_code_setup.tex → .../latex/sections/8_computer_code_setup.tex b/latex/sections/8_computer_code_setup.tex → .../latex/sections/8_computer_code_setup.tex
diff --git a/latex/sections/appendix_AB.tex → ..._PRACE_MaX/latex/sections/appendix_AB.tex b/latex/sections/appendix_AB.tex → ..._PRACE_MaX/latex/sections/appendix_AB.tex
diff --git a/latex/sections/appendix_CD.tex → ..._PRACE_MaX/latex/sections/appendix_CD.tex b/latex/sections/appendix_CD.tex → ..._PRACE_MaX/latex/sections/appendix_CD.tex
diff --git a/latex/sections/biblio.tex → .../2018_PRACE_MaX/latex/sections/biblio.tex b/latex/sections/biblio.tex → .../2018_PRACE_MaX/latex/sections/biblio.tex
diff --git a/latex/sections/custom_specifications.tex → .../latex/sections/custom_specifications.tex b/latex/sections/custom_specifications.tex → .../latex/sections/custom_specifications.tex
diff --git a/latex/sections/defs-private.sty → ...PRACE_MaX/latex/sections/defs-private.sty b/latex/sections/defs-private.sty → ...PRACE_MaX/latex/sections/defs-private.sty
diff --git a/...ctions/images/bandstructures/Al_bands.pdf → ...ctions/images/bandstructures/Al_bands.pdf b/...ctions/images/bandstructures/Al_bands.pdf → ...ctions/images/bandstructures/Al_bands.pdf
diff --git a/...ions/images/bandstructures/CaF2_bands.pdf → ...ions/images/bandstructures/CaF2_bands.pdf b/...ions/images/bandstructures/CaF2_bands.pdf → ...ions/images/bandstructures/CaF2_bands.pdf
diff --git a/...ions/images/bandstructures/GaAs_bands.pdf → ...ions/images/bandstructures/GaAs_bands.pdf b/...ions/images/bandstructures/GaAs_bands.pdf → ...ions/images/bandstructures/GaAs_bands.pdf
diff --git a/...tions/images/bandstructures/hBN_bands.pdf → ...tions/images/bandstructures/hBN_bands.pdf b/...tions/images/bandstructures/hBN_bands.pdf → ...tions/images/bandstructures/hBN_bands.pdf
diff --git a/latex/sections/main_body.tex → ...18_PRACE_MaX/latex/sections/main_body.tex b/latex/sections/main_body.tex → ...18_PRACE_MaX/latex/sections/main_body.tex
diff --git a/latex/sections/preamble.tex → ...018_PRACE_MaX/latex/sections/preamble.tex b/latex/sections/preamble.tex → ...018_PRACE_MaX/latex/sections/preamble.tex
diff --git a/docs/conf.py b/docs/conf.py
@@ -70,7 +70,7 @@
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
-exclude_patterns = []
+exclude_patterns = ['assets/*']
 
 # The reST default role (used for this markup: `text`) to use for all documents.
 #default_role = None

diff --git a/docs/pages/2018_PRACE_MaX/index.rst b/docs/pages/2018_PRACE_MaX/index.rst
@@ -23,10 +23,9 @@ Bologna, Italy.
 PRACE-MaX tutorial on high-throughput computations
 ==================================================
 
-The instructions of the tutorial were are found below, converted from the
-`original LaTeX
-source <https://github.com/aiidateam/aiida-tutorials/tree/master/latex>`__
-to MarkDown.
+The instructions below have been converted from the `original LaTeX source
+<https://github.com/aiidateam/aiida-tutorials-latex>`__.
+See also the `original PDF <https://object.cscs.ch/v1/AUTH_b1d80408b3d340db9f03d373bbde5c1e/marvel-vms/aiida_tutorial_2018_05_text.pdf>`_.
 
 Sections
 --------