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馃憣 IMPROVE: Terminal states do not reference process #205

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@chrisjsewell chrisjsewell commented Feb 10, 2021

This removes any cyclic references in finished processes,
allowing for garbage collection to be be automatically triggered in CPython.

closes #198 and should be a partial fix for aiidateam/aiida-core#4603

Note, without this change, garbage collection of the process on termination is possible (i.e. CPython can handle circular references).
However, it means that it is not automatically triggered, and thus the garbage collection has to be called/triggered in some other way.
This has been shown to be an issue with the AiiDA daemons, which keep the process in memory (and can lead to large amounts of memory being held).
I can't think of any good way to trigger such a garbage collection on process termination, since the process can't call garbage collection on itself?

I am going to create an alpha release from this branch (https://pypi.org/project/plumpy/0.18.5a0/), in order to test that this does not lead to any issues in the aiida-core tests

This removes any cyclic references in finished processes,
allowing for garbage collection to be be automatically triggered in CPython.
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codecov-io commented Feb 10, 2021

Codecov Report

Merging #205 (9d2ee16) into develop (bf94508) will decrease coverage by 0.06%.
The diff coverage is 83.34%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #205      +/-   ##
===========================================
- Coverage    90.66%   90.60%   -0.05%     
===========================================
  Files           22       22              
  Lines         2952     2956       +4     
===========================================
+ Hits          2676     2678       +2     
- Misses         276      278       +2     
Impacted Files Coverage 螖
plumpy/base/state_machine.py 86.24% <75.00%> (-0.29%) 猬囷笍
plumpy/process_states.py 88.67% <85.72%> (-0.31%) 猬囷笍
plumpy/version.py 100.00% <100.00%> (酶)

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pinging @muhrin, if you have time to have a look at some point cheers

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testing against aiida-core: aiidateam/aiida-core#4743

):
"""
:param process: The associated process
:param exception: The exception instance
:param trace_back: An optional exception traceback
"""
super().__init__(process)
super().__init__(None) # terminal state does not require process ref
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Could you just elaborate on this comment a litle to say
'Terminal states don't get a backreference to the state machine so that it's easier for python to clear the memory'
or something to that effect just so that it's clear:

  1. Why this was done, and,
  2. So it's clear under which circumstances it's None (which you've already stated actually)

"""
:param state_machine: The process this state belongs to
"""
self.state_machine = state_machine
self.state_machine: Optional[StateMachine] = state_machine
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I feel like a ValueError might be useful to be riased if state_machine is None for non terminal states. What do you think?

If it mattered more I would almost change the class hierarchy to have a TerminalState which doesn't even take it as an argument and is hardcoded to return False on is_terminal but I don't think it's worth it in this case but the exception might be useful. Just because I don't know how hardcoded the assumption is that the state_machine returns a non-None.

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chrisjsewell commented Feb 11, 2021

Hmm, from https://github.com/aiidateam/aiida-core/runs/1878917673?check_suite_focus=true, I think this might be causing something to hang in tests/engine/test_utils.py

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Hmm, from aiidateam/aiida-core/runs/1878917673?check_suite_focus=true, I think this might be causing something to hang in tests/engine/test_utils.py

This was actually because of: aiidateam/aiida-core#4751

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Set self.state_machine to None for terminal states
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