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SheinaG committed Mar 29, 2023
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18 changes: 12 additions & 6 deletions README.md
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Expand Up @@ -22,7 +22,7 @@ Few steps are required to extract the morphological ECG biomarkers, thos steps a

![alt text](https://github.com/SheinaG/pebm_new/blob/master/ecg_wth_bio.png?raw=true)

4. Summary Statistics - For a specified time window the five summary statistics (median, min, max, Ql and Q3) are computed for all ECG biomarkers.
4. Summary Statistics - For a specified time window the six summary statistics (mean, median, min, max, IQR and std) are computed for all ECG biomarkers.


## Installation
Expand All @@ -38,13 +38,11 @@ pip project: pip install -i https://test.pypi.org/simple/ pebm

Python >= 3.6

numpy == 1.20.2
numpy

mne == 0.23.0
mne

scipy == 1.7.0

wfdb == 3.4.0
wfdb

All the python requirements exept wfdb are installed when the toolbox is installed. To install wfbd run: pip install wfdb
### System Requirements:
Expand All @@ -53,6 +51,14 @@ To run the wavdet fiucial-points detector matlab runtime (MCR) 2021a is requierd

To run the epltd peak detector additional wfdb toolbox is requierd. https://archive.physionet.org/physiotools/wfdb-linux-quick-start.shtml

## Instractions for installation:

1. Install the "pecg" package using pip by running the command line: "pip install pecg".

2. Install the "wfdb" package using pip by running the command line: "pip install wfdb".

3. Follow the guidelines provided in the link: https://www.mathworks.com/products/compiler/matlab-runtime.html, and choose the version of 2021a(9.10).

## Documentation

https://pecg.readthedocs.io/en/latest/pecg.html
21 changes: 15 additions & 6 deletions docs/README.rst
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Expand Up @@ -26,7 +26,7 @@ Few steps are required to extract the morphological ECG biomarkers, thos steps a
:width: 600


4. Summary Statistics - For a specified time window the five summary statistics (median, min, max, Ql and Q3) are computed for all ECG biomarkers.
4. Summary Statistics - For a specified time window the six summary statistics (mean, median, min, max, IQR and std) are computed for all ECG biomarkers.

Installation
-----------------------
Expand All @@ -40,13 +40,11 @@ Requirements

Python >= 3.6

numpy == 1.20.2
numpy

mne == 0.23.0
mne

scipy == 1.7.0

wfdb == 3.4.0
wfdb

All the python requirements exept wfdb are installed when the toolbox is installed. To install wfbd run: pip install wfdb

Expand All @@ -67,7 +65,18 @@ If you wish to use the epltd peak detector `additional wfdb toolbox`_ is requier

If you don't want or can't install this - It's Ok! you can use another peak detectors from the package.

Instractions for installation:
------------------------------

1. Install the "pecg" package using pip by running the command line: "pip install pecg".

2. Install the "wfdb" package using pip by running the command line: "pip install wfdb".

3. Follow the guidelines provided in the link: https://www.mathworks.com/products/compiler/matlab-runtime.html, and choose the version of 2021a(9.10).

Documentation
------------------------

https://pecg.readthedocs.io/en/latest/


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17 changes: 12 additions & 5 deletions docs/build/README.html
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Expand Up @@ -179,7 +179,7 @@ <h2>Description<a class="headerlink" href="#description" title="Permalink to thi
</ol>
<a class="reference internal image-reference" href="_images/ecg_wth_bio.png"><img alt="_images/ecg_wth_bio.png" src="_images/ecg_wth_bio.png" style="width: 600px;" /></a>
<ol class="arabic simple" start="4">
<li><p>Summary Statistics - For a specified time window the five summary statistics (median, min, max, Ql and Q3) are computed for all ECG biomarkers.</p></li>
<li><p>Summary Statistics - For a specified time window the six summary statistics (mean, median, min, max, IQR and std) are computed for all ECG biomarkers.</p></li>
</ol>
</div>
<div class="section" id="installation">
Expand All @@ -190,10 +190,9 @@ <h2>Installation<a class="headerlink" href="#installation" title="Permalink to t
<div class="section" id="requirements">
<h2>Requirements<a class="headerlink" href="#requirements" title="Permalink to this heading"></a></h2>
<p>Python &gt;= 3.6</p>
<p>numpy == 1.20.2</p>
<p>mne == 0.23.0</p>
<p>scipy == 1.7.0</p>
<p>wfdb == 3.4.0</p>
<p>numpy</p>
<p>mne</p>
<p>wfdb</p>
<p>All the python requirements exept wfdb are installed when the toolbox is installed. To install wfbd run: pip install wfdb</p>
</div>
<div class="section" id="system-requirements">
Expand All @@ -203,6 +202,14 @@ <h2>System Requirements<a class="headerlink" href="#system-requirements" title="
<p>If you wish to use the epltd peak detector <a class="reference external" href="https://archive.physionet.org/physiotools/wfdb-linux-quick-start.shtml.">additional wfdb toolbox</a> is requierd.</p>
<p>If you don’t want or can’t install this - It’s Ok! you can use another peak detectors from the package.</p>
</div>
<div class="section" id="instractions-for-installation">
<h2>Instractions for installation:<a class="headerlink" href="#instractions-for-installation" title="Permalink to this heading"></a></h2>
<ol class="arabic simple">
<li><p>Install the “pecg” package using pip by running the command line: “pip install pecg”.</p></li>
<li><p>Install the “wfdb” package using pip by running the command line: “pip install wfdb”.</p></li>
<li><p>Follow the guidelines provided in the link: <a class="reference external" href="https://www.mathworks.com/products/compiler/matlab-runtime.html">https://www.mathworks.com/products/compiler/matlab-runtime.html</a>, and choose the version of 2021a(9.10).</p></li>
</ol>
</div>
<div class="section" id="documentation">
<h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to this heading"></a></h2>
<p><a class="reference external" href="https://pecg.readthedocs.io/en/latest/">https://pecg.readthedocs.io/en/latest/</a></p>
Expand Down
21 changes: 15 additions & 6 deletions docs/build/_sources/README.rst.txt
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,7 @@ Few steps are required to extract the morphological ECG biomarkers, thos steps a
:width: 600


4. Summary Statistics - For a specified time window the five summary statistics (median, min, max, Ql and Q3) are computed for all ECG biomarkers.
4. Summary Statistics - For a specified time window the six summary statistics (mean, median, min, max, IQR and std) are computed for all ECG biomarkers.

Installation
-----------------------
Expand All @@ -40,13 +40,11 @@ Requirements

Python >= 3.6

numpy == 1.20.2
numpy

mne == 0.23.0
mne

scipy == 1.7.0

wfdb == 3.4.0
wfdb

All the python requirements exept wfdb are installed when the toolbox is installed. To install wfbd run: pip install wfdb

Expand All @@ -67,7 +65,18 @@ If you wish to use the epltd peak detector `additional wfdb toolbox`_ is requier

If you don't want or can't install this - It's Ok! you can use another peak detectors from the package.

Instractions for installation:
------------------------------

1. Install the "pecg" package using pip by running the command line: "pip install pecg".

2. Install the "wfdb" package using pip by running the command line: "pip install wfdb".

3. Follow the guidelines provided in the link: https://www.mathworks.com/products/compiler/matlab-runtime.html, and choose the version of 2021a(9.10).

Documentation
------------------------

https://pecg.readthedocs.io/en/latest/


17 changes: 12 additions & 5 deletions docs/build/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -180,7 +180,7 @@ <h2>Description<a class="headerlink" href="#description" title="Permalink to thi
</ol>
<a class="reference internal image-reference" href="_images/ecg_wth_bio.png"><img alt="_images/ecg_wth_bio.png" src="_images/ecg_wth_bio.png" style="width: 600px;" /></a>
<ol class="arabic simple" start="4">
<li><p>Summary Statistics - For a specified time window the five summary statistics (median, min, max, Ql and Q3) are computed for all ECG biomarkers.</p></li>
<li><p>Summary Statistics - For a specified time window the six summary statistics (mean, median, min, max, IQR and std) are computed for all ECG biomarkers.</p></li>
</ol>
</div>
<div class="section" id="installation">
Expand All @@ -191,10 +191,9 @@ <h2>Installation<a class="headerlink" href="#installation" title="Permalink to t
<div class="section" id="requirements">
<h2>Requirements<a class="headerlink" href="#requirements" title="Permalink to this heading"></a></h2>
<p>Python &gt;= 3.6</p>
<p>numpy == 1.20.2</p>
<p>mne == 0.23.0</p>
<p>scipy == 1.7.0</p>
<p>wfdb == 3.4.0</p>
<p>numpy</p>
<p>mne</p>
<p>wfdb</p>
<p>All the python requirements exept wfdb are installed when the toolbox is installed. To install wfbd run: pip install wfdb</p>
</div>
<div class="section" id="system-requirements">
Expand All @@ -204,6 +203,14 @@ <h2>System Requirements<a class="headerlink" href="#system-requirements" title="
<p>If you wish to use the epltd peak detector <a class="reference external" href="https://archive.physionet.org/physiotools/wfdb-linux-quick-start.shtml.">additional wfdb toolbox</a> is requierd.</p>
<p>If you don’t want or can’t install this - It’s Ok! you can use another peak detectors from the package.</p>
</div>
<div class="section" id="instractions-for-installation">
<h2>Instractions for installation:<a class="headerlink" href="#instractions-for-installation" title="Permalink to this heading"></a></h2>
<ol class="arabic simple">
<li><p>Install the “pecg” package using pip by running the command line: “pip install pecg”.</p></li>
<li><p>Install the “wfdb” package using pip by running the command line: “pip install wfdb”.</p></li>
<li><p>Follow the guidelines provided in the link: <a class="reference external" href="https://www.mathworks.com/products/compiler/matlab-runtime.html">https://www.mathworks.com/products/compiler/matlab-runtime.html</a>, and choose the version of 2021a(9.10).</p></li>
</ol>
</div>
<div class="section" id="documentation">
<h2>Documentation<a class="headerlink" href="#documentation" title="Permalink to this heading"></a></h2>
<p><a class="reference external" href="https://pecg.readthedocs.io/en/latest/">https://pecg.readthedocs.io/en/latest/</a></p>
Expand Down
2 changes: 1 addition & 1 deletion docs/build/searchindex.js

Large diffs are not rendered by default.

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