CRSPR Cas9 treated Arabidopsis thaliana
Akio Miyao edited this page Jun 21, 2019
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3 revisions
Short-read sequences of multiple disruption lines for the GOLVEN gene family of Arabidopsis thaliana were analyzed by the bidirectional method.
Sequence: https://www.ncbi.nlm.nih.gov/sra/?term=SRR3441822
| Gene | Junction by 5' to 3' alignment | Junction by 3' to 5' alignment | Type | Size | Reference | SRR3441822 | Genotype | Sequence between junction | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chromosome | Position | Chromosome | Position | Ref | Alt | Ref | Alt | |||||
| AT1G66145.1 | 1 | 24,628,523 | 1 | 24,628,506 | deletion | -2 | 50 | 0 | 77 | 5 | ATATATATATATATATAT | |
| AT1G66145.1 | 1 | 24,628,620 | 1 | 24,628,635 | deletion | -19 | 50 | 0 | 55 | 3 | ATA | |
| AT1G66145.1 | 1 | 24,628,626 | 1 | 24,628,637 | deletion | -8 | 50 | 0 | 50 | 1 | GGAC | |
| AT1G66145.1 | 1 | 24,628,634 | 1 | 24,628,638 | deletion | -6 | 50 | 0 | 45 | 1 | T | |
| AT1G66145.1 | 1 | 24,628,634 | 1 | 24,628,640 | deletion | -9 | 50 | 0 | 46 | 2 | GT | |
| AT1G66145.1 | 1 | 24,628,634 | 2 | 3,395,930 | translocation | 50 | 0 | 44 | 1 | ATTC | ||
| AT1G66145.1 | 1 | 24,628,635 | 1 | 24,628,634 | insertion | 1 | 50 | 2 | 43 | 26 | A | |
| AT1G66145.1 | 1 | 24,628,635 | 1 | 24,628,635 | deletion | -1 | 50 | 0 | 44 | 6 | ||
| AT1G66145.1 | 1 | 24,628,635 | 1 | 24,628,638 | deletion | -4 | 50 | 0 | 44 | 2 | ||
| AT1G66145.1 | 1 | 24,628,635 | 1 | 24,628,657 | deletion | -25 | 50 | 0 | 45 | 7 | TC | |
| AT1G66145.1 | 1 | 24,628,636 | 1 | 24,628,634 | insertion | 1 | 50 | 0 | 43 | 10 | ||
| AT1G66145.1 | 1 | 24,628,637 | 1 | 24,628,637 | deletion | -1 | 50 | 0 | 44 | 6 | ||
| AT1G66145.1 | 1 | 24,628,638 | 1 | 24,628,639 | deletion | -3 | 50 | 0 | 44 | 1 | T | |
| AT4G16515.1 | 4 | 9,305,447 | 4 | 9,305,647 | deletion | -204 | 50 | 0 | 29 | 1 | ACT | |
| AT4G16515.1 | 4 | 9,305,456 | 4 | 9,305,501 | deletion | -45 | 50 | 0 | 20 | 3 | G | |
| AT4G16515.1 | 4 | 9,305,460 | 4 | 9,305,502 | deletion | -21 | 50 | 0 | 18 | 1 | CCGCCTCCTTTCTCCACCATTG | |
| AT4G16515.1 | 4 | 9,305,467 | 4 | 9,305,502 | deletion | -39 | 50 | 0 | 16 | 8 | H | GAC |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,476 | insertion | 1 | 50 | 2 | 6 | 6 | A | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,495 | deletion | -20 | 50 | 0 | 8 | 1 | C | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,500 | deletion | -3 | 50 | 0 | 6 | 1 | CCGCCTCCTTTCTCCACCATA | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,501 | deletion | -21 | 50 | 0 | 6 | 2 | CTTG | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,502 | deletion | -12 | 50 | 0 | 6 | 7 | H | CTCCTTTCTCCACC |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,505 | deletion | -4 | 50 | 0 | 6 | 1 | TGCCCGCCTCCTTTCTCCACCATTG | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,506 | deletion | -7 | 50 | 0 | 6 | 1 | AGCCCGCCTCCTTTCTCCACCAT | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,507 | deletion | -13 | 50 | 0 | 6 | 1 | CTCCTTTCTCCACCATTG | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,514 | deletion | -12 | 50 | 0 | 6 | 1 | TGCCCGCCTCCTTTCTCCACCATTGG | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,305,521 | deletion | -26 | 50 | 0 | 6 | 1 | CCGCCTCCTTTCTCCACCA | |
| AT4G16515.1 | 4 | 9,305,477 | 4 | 9,306,341 | deletion | -855 | 50 | 0 | 6 | 1 | TCCTTTCTCC | |
| AT4G16515.1 | 4 | 9,305,478 | 4 | 9,305,500 | insertion | 2 | 50 | 0 | 6 | 2 | GCCCGCCTCCTTTCTCCACCATTGA | |
| AT4G16515.1 | 4 | 9,305,478 | 4 | 9,305,505 | deletion | -4 | 50 | 0 | 6 | 21 | GCCCGCCTCCTTTCTCCACCATTG | |
| AT4G16515.1 | 4 | 9,305,478 | 4 | 9,305,521 | deletion | -23 | 50 | 0 | 6 | 3 | H | GCCCGCCTCCTTTCTCCACCA |
| AT4G16515.1 | 4 | 9,305,478 | 5 | 20,898,385 | translocation | 50 | 0 | 6 | 1 | |||
| AT4G16515.1 | 4 | 9,305,480 | 4 | 9,305,499 | deletion | -3 | 50 | 0 | 6 | 1 | TCCTTTCTCCACCATTG | |
| AT4G16515.1 | 4 | 9,305,480 | 4 | 9,305,501 | deletion | -2 | 50 | 0 | 6 | 1 | GCCTCCTTTCTCCACCATTG | |
| AT4G16515.1 | 4 | 9,305,500 | 4 | 9,305,500 | deletion | -1 | 50 | 0 | 8 | 3 | ||
| AT4G16515.1 | 4 | 9,305,501 | 4 | 9,305,500 | insertion | 1 | 50 | 2 | 10 | 2 | T | |
| AT5G64770.1 | 5 | 6,641,515 | 5 | 6,641,497 | deletion | -1 | 50 | 0 | 32 | 3 | AAAAAAAAAAAAAAAAAA | |
| AT5G64770.1 | 5 | 6,641,516 | 5 | 6,641,496 | insertion | 1 | 50 | 0 | 32 | 1 | AAAAAAAAAAAAAAAAAA | |
| AT5G64770.1 | 5 | 6,641,934 | 5 | 6,641,925 | insertion | 1 | 50 | 0 | 90 | 1 | TTTTTTT | |
| AT5G64770.1 | 5 | 6,642,227 | 5 | 6,642,219 | deletion | -1 | 50 | 0 | 92 | 1 | AAAAAGTT | |
| AT5G64770.1 | 5 | 6,643,552 | 5 | 6,643,552 | deletion | -2 | 50 | 0 | 87 | 1 | T | |
| AT5G64770.1 | 5 | 6,645,124 | 5 | 6,645,176 | inversion | 50 | 0 | 93 | 1 | ACACAG | ||
| AT5G64770.1 | 5 | 6,645,176 | 5 | 6,645,124 | inversion | 50 | 0 | 93 | 1 | CTGTGT | ||
| AT5G64770.1 | 5 | 6,646,059 | 5 | 6,646,058 | deletion | -1 | 50 | 0 | 86 | 1 | C | |
| AT5G64770.1 | 5 | 6,646,924 | 5 | 6,646,915 | deletion | -1 | 50 | 0 | 82 | 10 | TTTTTTTTT | |
| AT5G64770.1 | 5 | 6,646,925 | 5 | 6,646,914 | insertion | 1 | 50 | 0 | 82 | 2 | TTTTTTTTT | |
| AT2G03830.1 | 1 | 1,171,508 | 1 | 1,171,490 | insertion | 1 | 50 | 0 | 88 | 1 | TTTTTTTATTTTTTTT | |
| AT2G03830.1 | 1 | 1,171,547 | 1 | 1,171,538 | deletion | -1 | 50 | 0 | 83 | 9 | AAAAAAAAA | |
| AT2G03830.1 | 1 | 1,171,548 | 1 | 1,171,537 | insertion | 1 | 50 | 0 | 83 | 6 | AAAAAAAAA | |
| AT2G03830.1 | 1 | 1,171,590 | 1 | 1,171,582 | deletion | -1 | 50 | 0 | 90 | 4 | AAAAAAAA | |
| AT2G03830.1 | 1 | 1,171,643 | 1 | 1,171,634 | insertion | 1 | 50 | 0 | 91 | 1 | AAAAAAA | |
| AT2G03830.1 | 1 | 1,173,034 | 1 | 1,173,026 | deletion | -1 | 50 | 0 | 87 | 4 | AAAAAAAA | |
| AT2G04025.1 | 2 | 1,277,014 | 2 | 1,277,013 | insertion | 1 | 50 | 0 | 1 | 14 | M | A |
| AT2G04025.1 | 2 | 1,277,014 | 2 | 1,277,016 | insertion | 1 | 50 | 0 | 1 | 1 | ATTA | |
| AT2G04025.1 | 2 | 1,277,015 | 2 | 1,277,014 | deletion | -1 | 50 | 0 | 2 | 9 | T | |
| AT2G04025.1 | 2 | 1,277,015 | 2 | 1,277,072 | deletion | -59 | 50 | 0 | 2 | 31 | T | |
| AT2G04025.1 | 2 | 1,277,016 | 2 | 1,277,013 | insertion | 1 | 50 | 0 | 1 | 30 | M | T |
| AT2G04025.1 | 2 | 1,277,073 | 2 | 1,277,073 | insertion | 1 | 50 | 0 | 1 | 2 | GA | |
| AT2G04025.1 | 2 | 1,277,074 | 2 | 1,277,072 | insertion | 1 | 50 | 0 | 1 | 23 | M | |
| AT2G04025.1 | 2 | 1,277,074 | 2 | 1,277,077 | deletion | -4 | 50 | 0 | 1 | 5 | M | |
| AT2G04025.1 | 2 | 1,277,075 | 2 | 1,277,073 | insertion | 1 | 50 | 0 | 1 | 26 | M | |
| AT2G04025.1 | 2 | 1,277,075 | 2 | 1,277,076 | deletion | -2 | 50 | 0 | 1 | 8 | M | |
| AT2G04025.1 | 2 | 1,277,077 | 2 | 1,277,076 | deletion | -3 | 50 | 0 | 1 | 13 | M | ATC |
| AT3G02242.1 | 3 | 420,099 | 3 | 420,144 | deletion | -42 | 50 | 0 | 37 | 1 | CTTC | |
| AT3G02242.1 | 3 | 420,126 | 3 | 420,146 | deletion | -25 | 50 | 0 | 18 | 4 | TTAT | |
| AT3G02242.1 | 3 | 420,137 | 3 | 420,145 | deletion | -9 | 50 | 0 | 7 | 4 | H | |
| AT3G02242.1 | 3 | 420,142 | 3 | 420,144 | deletion | -5 | 50 | 0 | 6 | 3 | H | CT |
| AT3G02242.1 | 3 | 420,143 | 3 | 420,144 | deletion | -3 | 50 | 0 | 4 | 8 | C | |
| AT3G02242.1 | 3 | 420,145 | 3 | 420,143 | insertion | 1 | 50 | 0 | 2 | 2 | ||
| AT3G02242.1 | 3 | 420,145 | 3 | 420,144 | insertion | 1 | 50 | 2 | 2 | 49 | A | |
| AT3G02242.1 | 3 | 420,145 | 3 | 420,145 | deletion | -1 | 50 | 0 | 2 | 43 | ||
| AT3G02242.1 | 3 | 420,146 | 3 | 420,144 | insertion | 1 | 50 | 0 | 2 | 4 | ||
| AT3G02242.1 | 3 | 420,148 | 3 | 420,146 | deletion | -1 | 50 | 0 | 2 | 22 | TT | |
| AT3G02242.1 | 3 | 420,217 | 3 | 420,208 | deletion | -1 | 50 | 0 | 57 | 5 | TTTTTTTTT | |
| AT3G02242.1 | 3 | 420,218 | 3 | 420,207 | insertion | 1 | 50 | 0 | 58 | 2 | TTTTTTTTT | |
| AT3G02242.1 | 3 | 420,541 | 3 | 420,556 | deletion | -18 | 50 | 0 | 85 | 1 | GA | |
| AT3G02242.1 | 3 | 420,547 | 3 | 420,556 | deletion | -10 | 50 | 0 | 84 | 1 | ||
| AT3G02242.1 | 3 | 420,555 | 3 | 420,554 | deletion | -2 | 50 | 0 | 82 | 2 | AG | |
| AT3G02242.1 | 3 | 420,556 | 3 | 420,556 | insertion | 16 | 50 | 0 | 82 | 1 | TTCAGTATTTGTAAACT | |
| AT3G02242.1 | 3 | 420,557 | 3 | 420,548 | insertion | 1 | 50 | 0 | 84 | 10 | AAAAGAA | |
| AT3G02242.1 | 3 | 420,557 | 3 | 420,554 | deletion | -3 | 50 | 0 | 83 | 4 | AAGAA | |
| AT3G02242.1 | 3 | 420,557 | 3 | 420,557 | deletion | -1 | 50 | 0 | 82 | 1 | ||
| AT3G02242.1 | 3 | 420,558 | 3 | 420,567 | deletion | -12 | 50 | 0 | 83 | 2 | AG | |
| AT3G02242.1 | 3 | 420,861 | 3 | 420,861 | deletion | -1 | 50 | 0 | 94 | 1 | ||
| AT5G51451.1 | 5 | 20,898,358 | 5 | 20,898,385 | deletion | -34 | 50 | 0 | 70 | 1 | TGCTTC | |
| AT5G51451.1 | 5 | 20,898,373 | 5 | 20,898,390 | deletion | -24 | 50 | 0 | 63 | 1 | CAATGA | |
| AT5G51451.1 | 5 | 20,898,376 | 5 | 20,898,386 | deletion | -14 | 50 | 0 | 63 | 4 | GCT | |
| AT5G51451.1 | 5 | 20,898,378 | 5 | 20,899,921 | deletion | -1,531 | 50 | 0 | 59 | 1 | CCTCGATAAGATA | |
| AT5G51451.1 | 5 | 20,898,380 | 5 | 20,898,385 | deletion | -7 | 50 | 0 | 59 | 1 | T | |
| AT5G51451.1 | 5 | 20,898,383 | 5 | 20,898,386 | deletion | -4 | 50 | 0 | 58 | 1 | ||
| AT5G51451.1 | 5 | 20,898,386 | 5 | 20,898,385 | deletion | -1 | 50 | 0 | 58 | 49 | H | T |
| AT5G51451.1 | 5 | 20,898,387 | 5 | 20,898,384 | insertion | 1 | 50 | 0 | 58 | 27 | H | T |
| AT5G51451.1 | 5 | 20,898,387 | 5 | 20,898,388 | deletion | -3 | 50 | 0 | 58 | 14 | T | |
| AT5G51451.1 | 5 | 20,898,387 | 5 | 20,898,391 | deletion | -5 | 50 | 0 | 58 | 3 | ||
| AT5G51451.1 | 5 | 20,898,702 | 5 | 20,898,709 | deletion | -10 | 50 | 0 | 6 | 3 | H | GC |
| AT5G51451.1 | 5 | 20,898,704 | 5 | 20,898,703 | insertion | 1 | 50 | 0 | 3 | 29 | A | |
| AT5G51451.1 | 5 | 20,898,705 | 5 | 20,898,704 | deletion | -1 | 50 | 0 | 2 | 2 | T | |
| AT5G51451.1 | 5 | 20,898,706 | 5 | 20,898,703 | insertion | 1 | 50 | 0 | 3 | 70 | T |