Merge pull request #206 from alan-turing-institute/update-python-requ…

…irements Update Python requirements
alan-turing-institute · May 30, 2023 · 4d55c54 · 4d55c54
2 parents 844e582 + 4521c10
commit 4d55c54
Showing 1 changed file with 62 additions and 61 deletions.
diff --git a/requirements.txt b/requirements.txt
@@ -1,37 +1,38 @@
 # AUTOMATICALLY GENERATED. DO NOT EDIT.
 alabaster==0.7.13 ; python_version >= "3.8" and python_version < "4.0"
-anyio==3.6.2 ; python_version >= "3.8" and python_version < "4.0"
+anyio==3.7.0 ; python_version >= "3.8" and python_version < "4.0"
 appdirs==1.4.4 ; python_version >= "3.8" and python_version < "4.0"
-appnope==0.1.3 ; python_version >= "3.8" and python_version < "4.0" and sys_platform == "darwin" or python_version >= "3.8" and python_version < "4.0" and platform_system == "Darwin"
+appnope==0.1.3 ; python_version >= "3.8" and python_version < "4.0" and (sys_platform == "darwin" or platform_system == "Darwin")
 argon2-cffi-bindings==21.2.0 ; python_version >= "3.8" and python_version < "4.0"
 argon2-cffi==21.3.0 ; python_version >= "3.8" and python_version < "4.0"
 arrow==1.2.3 ; python_version >= "3.8" and python_version < "4.0"
 art==5.9 ; python_version >= "3.8" and python_version < "4.0"
-astroid==2.15.0 ; python_version >= "3.8" and python_version < "4.0"
+astroid==2.15.5 ; python_version >= "3.8" and python_version < "4.0"
 asttokens==2.2.1 ; python_version >= "3.8" and python_version < "4.0"
 attrs==21.4.0 ; python_version >= "3.8" and python_version < "4.0"
+autopep8==2.0.0 ; python_version >= "3.8" and python_version < "4.0"
 babel==2.12.1 ; python_version >= "3.8" and python_version < "4.0"
 backcall==0.2.0 ; python_version >= "3.8" and python_version < "4.0"
-beautifulsoup4==4.11.2 ; python_version >= "3.8" and python_version < "4.0"
+beautifulsoup4==4.12.2 ; python_version >= "3.8" and python_version < "4.0"
 black==22.12.0 ; python_version >= "3.8" and python_version < "4.0"
 bleach==6.0.0 ; python_version >= "3.8" and python_version < "4.0"
 bokeh==2.4.3 ; python_version >= "3.8" and python_version < "4.0"
-certifi==2022.12.7 ; python_version >= "3.8" and python_version < "4.0"
+certifi==2023.5.7 ; python_version >= "3.8" and python_version < "4.0"
 cffi==1.15.1 ; python_version >= "3.8" and python_version < "4.0"
 cftime==1.6.2 ; python_version >= "3.8" and python_version < "4.0"
-charset-normalizer==3.1.0 ; python_version >= "3.8" and python_version < "4"
+charset-normalizer==3.1.0 ; python_version >= "3.8" and python_version < "4.0"
 click==8.1.3 ; python_version >= "3.8" and python_version < "4.0"
 cloudpickle==2.2.1 ; python_version >= "3.8" and python_version < "4.0"
 colorama==0.4.6 ; python_version >= "3.8" and python_version < "4.0"
-comm==0.1.2 ; python_version >= "3.8" and python_version < "4.0"
+comm==0.1.3 ; python_version >= "3.8" and python_version < "4.0"
 commonmark==0.9.1 ; python_version >= "3.8" and python_version < "4.0"
 contourpy==1.0.7 ; python_version >= "3.8" and python_version < "4.0"
-coverage[toml]==7.2.2 ; python_version >= "3.8" and python_version < "4.0"
+coverage[toml]==7.2.6 ; python_version >= "3.8" and python_version < "4.0"
 cycler==0.11.0 ; python_version >= "3.8" and python_version < "4.0"
-cython==0.29.33 ; python_version >= "3.8" and python_version < "4.0"
+cython==0.29.35 ; python_version >= "3.8" and python_version < "4.0"
 dask==2022.12.1 ; python_version >= "3.8" and python_version < "4.0"
 dask[distributed]==2022.12.1 ; python_version >= "3.8" and python_version < "4.0"
-debugpy==1.6.6 ; python_version >= "3.8" and python_version < "4.0"
+debugpy==1.6.7 ; python_version >= "3.8" and python_version < "4.0"
 decorator==5.1.1 ; python_version >= "3.8" and python_version < "4.0"
 defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "4.0"
 dill==0.3.6 ; python_version >= "3.8" and python_version < "4.0"
@@ -40,28 +41,27 @@ docutils==0.17.1 ; python_version >= "3.8" and python_version < "4.0"
 entrypoints==0.4 ; python_version >= "3.8" and python_version < "4.0"
 exceptiongroup==1.1.1 ; python_version >= "3.8" and python_version < "3.11"
 executing==1.2.0 ; python_version >= "3.8" and python_version < "4.0"
-fastjsonschema==2.16.3 ; python_version >= "3.8" and python_version < "4.0"
+fastjsonschema==2.17.1 ; python_version >= "3.8" and python_version < "4.0"
 flake8==5.0.4 ; python_version >= "3.8" and python_version < "4.0"
-fonttools==4.39.0 ; python_version >= "3.8" and python_version < "4.0"
+fonttools==4.39.4 ; python_version >= "3.8" and python_version < "4.0"
 fqdn==1.5.1 ; python_version >= "3.8" and python_version < "4"
-fsspec==2023.3.0 ; python_version >= "3.8" and python_version < "4.0"
+fsspec==2023.5.0 ; python_version >= "3.8" and python_version < "4.0"
 geographiclib==2.0 ; python_version >= "3.8" and python_version < "4.0"
 geopy==2.3.0 ; python_version >= "3.8" and python_version < "4.0"
 gitdb==4.0.10 ; python_version >= "3.8" and python_version < "4.0"
 gitpython==3.1.31 ; python_version >= "3.8" and python_version < "4.0"
-greenlet==2.0.2 ; python_version >= "3.8" and platform_machine == "aarch64" and python_version < "4.0" or python_version >= "3.8" and platform_machine == "ppc64le" and python_version < "4.0" or python_version >= "3.8" and platform_machine == "x86_64" and python_version < "4.0" or python_version >= "3.8" and platform_machine == "amd64" and python_version < "4.0" or python_version >= "3.8" and platform_machine == "AMD64" and python_version < "4.0" or python_version >= "3.8" and platform_machine == "win32" and python_version < "4.0" or python_version >= "3.8" and platform_machine == "WIN32" and python_version < "4.0"
+greenlet==2.0.2 ; python_version >= "3.8" and (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "4.0"
 h5py==3.8.0 ; python_version >= "3.8" and python_version < "4.0"
-heapdict==1.0.1 ; python_version >= "3.8" and python_version < "4.0"
-idna==3.4 ; python_version >= "3.8" and python_version < "4"
-imageio==2.26.0 ; python_version >= "3.8" and python_version < "4.0"
+idna==3.4 ; python_version >= "3.8" and python_version < "4.0"
+imageio==2.29.0 ; python_version >= "3.8" and python_version < "4.0"
 imagesize==1.4.1 ; python_version >= "3.8" and python_version < "4.0"
-importlib-metadata==6.0.0 ; python_version >= "3.8" and python_version < "4.0"
+importlib-metadata==6.6.0 ; python_version >= "3.8" and python_version < "4.0"
 importlib-resources==5.12.0 ; python_version >= "3.8" and python_version < "3.10"
 iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "4.0"
-ipykernel==6.21.3 ; python_version >= "3.8" and python_version < "4.0"
+ipykernel==6.23.1 ; python_version >= "3.8" and python_version < "4.0"
 ipython-genutils==0.2.0 ; python_version >= "3.8" and python_version < "4.0"
-ipython==8.11.0 ; python_version >= "3.8" and python_version < "4.0"
-ipywidgets==7.7.3 ; python_version >= "3.8" and python_version < "4.0"
+ipython==8.12.2 ; python_version >= "3.8" and python_version < "4.0"
+ipywidgets==7.7.5 ; python_version >= "3.8" and python_version < "4.0"
 isodate==0.6.1 ; python_version >= "3.8" and python_version < "4.0"
 isoduration==20.11.0 ; python_version >= "3.8" and python_version < "4.0"
 isort==5.12.0 ; python_version >= "3.8" and python_version < "4.0"
@@ -73,20 +73,20 @@ jsonschema==4.17.3 ; python_version >= "3.8" and python_version < "4.0"
 jsonschema[format-nongpl]==4.17.3 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-book==0.13.2 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-cache==0.4.3 ; python_version >= "3.8" and python_version < "4.0"
-jupyter-client==8.0.3 ; python_version >= "3.8" and python_version < "4.0"
+jupyter-client==8.2.0 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-core==5.3.0 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-events==0.6.3 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-server-mathjax==0.2.6 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-server-terminals==0.4.4 ; python_version >= "3.8" and python_version < "4.0"
-jupyter-server==2.5.0 ; python_version >= "3.8" and python_version < "4.0"
+jupyter-server==2.6.0 ; python_version >= "3.8" and python_version < "4.0"
 jupyter-sphinx==0.3.2 ; python_version >= "3.8" and python_version < "4.0"
 jupyterlab-pygments==0.2.2 ; python_version >= "3.8" and python_version < "4.0"
-jupyterlab-widgets==1.1.2 ; python_version >= "3.8" and python_version < "4.0"
+jupyterlab-widgets==1.1.4 ; python_version >= "3.8" and python_version < "4.0"
 kiwisolver==1.4.4 ; python_version >= "3.8" and python_version < "4.0"
 latexcodec==2.0.1 ; python_version >= "3.8" and python_version < "4.0"
 lazy-object-proxy==1.9.0 ; python_version >= "3.8" and python_version < "4.0"
 line-profiler==3.5.1 ; python_version >= "3.8" and python_version < "4.0"
-linkify-it-py==2.0.0 ; python_version >= "3.8" and python_version < "4.0"
+linkify-it-py==2.0.2 ; python_version >= "3.8" and python_version < "4.0"
 llvmlite==0.39.1 ; python_version >= "3.8" and python_version < "4.0"
 locket==1.0.0 ; python_version >= "3.8" and python_version < "4.0"
 lxml==4.9.2 ; python_version >= "3.8" and python_version < "4.0"
@@ -103,37 +103,38 @@ mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "4.0"
 mypy==0.982 ; python_version >= "3.8" and python_version < "4.0"
 myst-nb==0.13.2 ; python_version >= "3.8" and python_version < "4.0"
 myst-parser==0.15.2 ; python_version >= "3.8" and python_version < "4.0"
-nbclassic==0.5.3 ; python_version >= "3.8" and python_version < "4.0"
+nbclassic==1.0.0 ; python_version >= "3.8" and python_version < "4.0"
 nbclient==0.5.13 ; python_version >= "3.8" and python_version < "4.0"
 nbconvert==6.5.4 ; python_version >= "3.8" and python_version < "4.0"
-nbdime==3.1.1 ; python_version >= "3.8" and python_version < "4.0"
-nbformat==5.7.3 ; python_version >= "3.8" and python_version < "4.0"
-nbqa==1.6.3 ; python_version >= "3.8" and python_version < "4.0"
+nbdime==3.2.1 ; python_version >= "3.8" and python_version < "4.0"
+nbformat==5.8.0 ; python_version >= "3.8" and python_version < "4.0"
+nbqa==1.7.0 ; python_version >= "3.8" and python_version < "4.0"
 nest-asyncio==1.5.6 ; python_version >= "3.8" and python_version < "4.0"
 netcdf4==1.6.3 ; python_version >= "3.8" and python_version < "4.0"
-notebook-shim==0.2.2 ; python_version >= "3.8" and python_version < "4.0"
-notebook==6.5.3 ; python_version >= "3.8" and python_version < "4.0"
+notebook-shim==0.2.3 ; python_version >= "3.8" and python_version < "4.0"
+notebook==6.5.4 ; python_version >= "3.8" and python_version < "4.0"
 numba==0.56.4 ; python_version >= "3.8" and python_version < "4.0"
 numpy==1.23.5 ; python_version >= "3.8" and python_version < "4.0"
 numpydoc==1.5.0 ; python_version >= "3.8" and python_version < "4.0"
-packaging==23.0 ; python_version >= "3.8" and python_version < "4.0"
+overrides==7.3.1 ; python_version >= "3.8" and python_version < "4.0"
+packaging==23.1 ; python_version >= "3.8" and python_version < "4.0"
 pandas==1.5.3 ; python_version >= "3.8" and python_version < "4.0"
 pandocfilters==1.5.0 ; python_version >= "3.8" and python_version < "4.0"
 parquet==1.3.1 ; python_version >= "3.8" and python_version < "4.0"
 parso==0.8.3 ; python_version >= "3.8" and python_version < "4.0"
-partd==1.3.0 ; python_version >= "3.8" and python_version < "4.0"
+partd==1.4.0 ; python_version >= "3.8" and python_version < "4.0"
 pathspec==0.11.1 ; python_version >= "3.8" and python_version < "4.0"
 pexpect==4.8.0 ; python_version >= "3.8" and python_version < "4.0" and sys_platform != "win32"
 pickleshare==0.7.5 ; python_version >= "3.8" and python_version < "4.0"
-pillow==9.4.0 ; python_version >= "3.8" and python_version < "4.0"
+pillow==9.5.0 ; python_version >= "3.8" and python_version < "4.0"
 pkgutil-resolve-name==1.3.10 ; python_version >= "3.8" and python_version < "3.9"
-platformdirs==3.1.1 ; python_version >= "3.8" and python_version < "4.0"
+platformdirs==3.5.1 ; python_version >= "3.8" and python_version < "4.0"
 pluggy==1.0.0 ; python_version >= "3.8" and python_version < "4.0"
 ply==3.11 ; python_version >= "3.8" and python_version < "4.0"
-prometheus-client==0.16.0 ; python_version >= "3.8" and python_version < "4.0"
+prometheus-client==0.17.0 ; python_version >= "3.8" and python_version < "4.0"
 prompt-toolkit==3.0.38 ; python_version >= "3.8" and python_version < "4.0"
-psutil==5.9.4 ; python_version >= "3.8" and python_version < "4.0"
-ptyprocess==0.7.0 ; python_version >= "3.8" and python_version < "4.0" and sys_platform != "win32" or python_version >= "3.8" and python_version < "4.0" and os_name != "nt"
+psutil==5.9.5 ; python_version >= "3.8" and python_version < "4.0"
+ptyprocess==0.7.0 ; python_version >= "3.8" and python_version < "4.0" and (sys_platform != "win32" or os_name != "nt")
 pure-eval==0.2.2 ; python_version >= "3.8" and python_version < "4.0"
 pyarrow==10.0.1 ; python_version >= "3.8" and python_version < "4.0"
 pybtex-docutils==1.0.2 ; python_version >= "3.8" and python_version < "4.0"
@@ -144,24 +145,24 @@ pydata-sphinx-theme==0.8.1 ; python_version >= "3.8" and python_version < "4.0"
 pydocstyle==6.3.0 ; python_version >= "3.8" and python_version < "4.0"
 pyee==8.2.2 ; python_version >= "3.8" and python_version < "4.0"
 pyflakes==2.5.0 ; python_version >= "3.8" and python_version < "4.0"
-pygments==2.14.0 ; python_version >= "3.8" and python_version < "4.0"
+pygments==2.15.1 ; python_version >= "3.8" and python_version < "4.0"
 pylama==8.4.1 ; python_version >= "3.8" and python_version < "4.0"
-pylint==2.17.0 ; python_version >= "3.8" and python_version < "4.0"
+pylint==2.17.4 ; python_version >= "3.8" and python_version < "4.0"
 pyparsing==3.0.9 ; python_version >= "3.8" and python_version < "4.0"
 pyppeteer==1.0.2 ; python_version >= "3.8" and python_version < "4.0"
 pyrsistent==0.19.3 ; python_version >= "3.8" and python_version < "4.0"
-pytest-cov==4.0.0 ; python_version >= "3.8" and python_version < "4.0"
-pytest==7.2.2 ; python_version >= "3.8" and python_version < "4.0"
+pytest-cov==4.1.0 ; python_version >= "3.8" and python_version < "4.0"
+pytest==7.3.1 ; python_version >= "3.8" and python_version < "4.0"
 python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "4.0"
 python-json-logger==2.0.7 ; python_version >= "3.8" and python_version < "4.0"
-pytz==2022.7.1 ; python_version >= "3.8" and python_version < "4.0"
-pywin32==305 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.8" and python_version < "4.0"
+pytz==2023.3 ; python_version >= "3.8" and python_version < "4.0"
+pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.8" and python_version < "4.0"
 pywinpty==2.0.10 ; python_version >= "3.8" and python_version < "4.0" and os_name == "nt"
 pyyaml==6.0 ; python_version >= "3.8" and python_version < "4.0"
-pyzmq==25.0.1 ; python_version >= "3.8" and python_version < "4.0"
-rdflib==6.2.0 ; python_version >= "3.8" and python_version < "4.0"
+pyzmq==25.1.0 ; python_version >= "3.8" and python_version < "4.0"
+rdflib==6.3.2 ; python_version >= "3.8" and python_version < "4.0"
 recommonmark==0.7.1 ; python_version >= "3.8" and python_version < "4.0"
-requests==2.28.2 ; python_version >= "3.8" and python_version < "4"
+requests==2.31.0 ; python_version >= "3.8" and python_version < "4.0"
 rfc3339-validator==0.1.4 ; python_version >= "3.8" and python_version < "4.0"
 rfc3986-validator==0.1.1 ; python_version >= "3.8" and python_version < "4.0"
 rinoh-typeface-dejavuserif==0.1.3 ; python_version >= "3.8" and python_version < "4.0"
@@ -171,17 +172,17 @@ rinoh-typeface-texgyrepagella==0.1.1 ; python_version >= "3.8" and python_versio
 rinohtype==0.5.4 ; python_version >= "3.8" and python_version < "4.0"
 scikit-learn==1.2.2 ; python_version >= "3.8" and python_version < "4.0"
 scipy==1.9.3 ; python_version >= "3.8" and python_version < "4.0"
-send2trash==1.8.0 ; python_version >= "3.8" and python_version < "4.0"
-setuptools==67.6.0 ; python_version >= "3.8" and python_version < "4.0"
+send2trash==1.8.2 ; python_version >= "3.8" and python_version < "4.0"
+setuptools==67.8.0 ; python_version >= "3.8" and python_version < "4.0"
 six==1.16.0 ; python_version >= "3.8" and python_version < "4.0"
 smmap==5.0.0 ; python_version >= "3.8" and python_version < "4.0"
 sniffio==1.3.0 ; python_version >= "3.8" and python_version < "4.0"
 snowballstemmer==2.2.0 ; python_version >= "3.8" and python_version < "4.0"
 sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "4.0"
-soupsieve==2.4 ; python_version >= "3.8" and python_version < "4.0"
+soupsieve==2.4.1 ; python_version >= "3.8" and python_version < "4.0"
 sphinx-book-theme==0.3.3 ; python_version >= "3.8" and python_version < "4.0"
 sphinx-comments==0.0.3 ; python_version >= "3.8" and python_version < "4.0"
-sphinx-copybutton==0.5.1 ; python_version >= "3.8" and python_version < "4.0"
+sphinx-copybutton==0.5.2 ; python_version >= "3.8" and python_version < "4.0"
 sphinx-design==0.1.0 ; python_version >= "3.8" and python_version < "4.0"
 sphinx-external-toc==0.3.1 ; python_version >= "3.8" and python_version < "4.0"
 sphinx-jupyterbook-latex==0.5.2 ; python_version >= "3.8" and python_version < "4.0"
@@ -196,7 +197,7 @@ sphinxcontrib-htmlhelp==2.0.1 ; python_version >= "3.8" and python_version < "4.
 sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_version < "4.0"
 sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_version < "4.0"
 sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_version < "4.0"
-sqlalchemy==1.4.46 ; python_version >= "3.8" and python_version < "4.0"
+sqlalchemy==1.4.48 ; python_version >= "3.8" and python_version < "4.0"
 stack-data==0.6.2 ; python_version >= "3.8" and python_version < "4.0"
 tblib==1.7.0 ; python_version >= "3.8" and python_version < "4.0"
 terminado==0.17.1 ; python_version >= "3.8" and python_version < "4.0"
@@ -205,22 +206,22 @@ thriftpy2==0.4.16 ; python_version >= "3.8" and python_version < "4.0"
 tinycss2==1.2.1 ; python_version >= "3.8" and python_version < "4.0"
 tokenize-rt==5.0.0 ; python_version >= "3.8" and python_version < "4.0"
 tomli==2.0.1 ; python_version >= "3.8" and python_version < "4.0"
-tomlkit==0.11.6 ; python_version >= "3.8" and python_version < "4.0"
+tomlkit==0.11.8 ; python_version >= "3.8" and python_version < "4.0"
 toolz==0.12.0 ; python_version >= "3.8" and python_version < "4.0"
-tornado==6.2 ; python_version >= "3.8" and python_version < "4.0"
+tornado==6.3.2 ; python_version >= "3.8" and python_version < "4.0"
 tqdm==4.65.0 ; python_version >= "3.8" and python_version < "4.0"
 traitlets==5.9.0 ; python_version >= "3.8" and python_version < "4.0"
-typing-extensions==4.5.0 ; python_version >= "3.8" and python_version < "4.0"
-uc-micro-py==1.0.1 ; python_version >= "3.8" and python_version < "4.0"
+typing-extensions==4.6.2 ; python_version >= "3.8" and python_version < "4.0"
+uc-micro-py==1.0.2 ; python_version >= "3.8" and python_version < "4.0"
 uri-template==1.2.0 ; python_version >= "3.8" and python_version < "4.0"
-urllib3==1.26.15 ; python_version >= "3.8" and python_version < "4.0"
+urllib3==1.26.16 ; python_version >= "3.8" and python_version < "4.0"
 wcwidth==0.2.6 ; python_version >= "3.8" and python_version < "4.0"
-webcolors==1.12 ; python_version >= "3.8" and python_version < "4.0"
+webcolors==1.13 ; python_version >= "3.8" and python_version < "4.0"
 webencodings==0.5.1 ; python_version >= "3.8" and python_version < "4.0"
-websocket-client==1.5.1 ; python_version >= "3.8" and python_version < "4.0"
+websocket-client==1.5.2 ; python_version >= "3.8" and python_version < "4.0"
 websockets==10.4 ; python_version >= "3.8" and python_version < "4.0"
 wheel==0.40.0 ; python_version >= "3.8" and python_version < "4.0"
-widgetsnbextension==3.6.2 ; python_version >= "3.8" and python_version < "4.0"
+widgetsnbextension==3.6.4 ; python_version >= "3.8" and python_version < "4.0"
 wrapt==1.15.0 ; python_version >= "3.8" and python_version < "4.0"
-zict==2.2.0 ; python_version >= "3.8" and python_version < "4.0"
+zict==3.0.0 ; python_version >= "3.8" and python_version < "4.0"
 zipp==3.15.0 ; python_version >= "3.8" and python_version < "4.0"