iNNvestigate 2.0 #277
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iNNvestigate 2.0 #277
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Cuts down duplicate boilerplate code.
To help automate type annotations.
which was deprecated in newer Keras versions
to replace some functionality of `GradientWRT`
as anaylzer model does not have to be saved a Keras model. Instead, use `tf.save_model` in the future.
Simplify return type and types of ReverseTensorDict
by applying `_layer_wo_act_b` on each tensor instead of list of tensors.
by moving `get_input_layers` to checks.py
`is_not_finite` is from iNNvestigate's backend, not Keras'.
Assert compatibility with `AugmentReduceBase` via `_assert_neuron_selection_mode`. Some general class attributes have been moved up to the parent class `WrapperBase`.
to facilitate move towards more functional backend.
and invert argument order for `broadcast_np_tensors_to_keras_tensors`.
use previous mechanism of overwriting the subanalyzer `neuron_selection_mode`. Add comments and assertion of subanalyer.
* rework neuron indexing to use `tf.gather` instead of `tf.gather_nd` * rename `Gather`-layer into `NeuronSelection`, as this is the only thing it is used for. * fix and annotate head mappings * remove gather functions in backend that just wrap TF's functions * make augmentation more readable * remove some dead code in `_augment`of Integrated Gradients
instead of dictionaries containing layers.
instead of iNNvestigate's applications.
Somehow the reference must have been modified by mistake during development. Using the reference from iNNvestigate 1.0.8 (see e.g.: https://github.com/albermax/innvestigate/blob/b1084b2b5c59434060c78bb163b9bf006f5bbeb8/innvestigate/tests/tools/test_perturbate.py#L62 ), the tests pass again. Also fix warning thrown by deprecated `evaluate_generator`.
Codecov Report
@@ Coverage Diff @@
## master #277 +/- ##
==========================================
- Coverage 71.41% 70.22% -1.19%
==========================================
Files 45 42 -3
Lines 4216 3369 -847
Branches 619 554 -65
==========================================
- Hits 3011 2366 -645
+ Misses 1017 846 -171
+ Partials 188 157 -31
Continue to review full report at Codecov.
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* allow Python 3.10 * Stop filtering deprecation warnings * update mail address
1. Installing PoetryTo ensure reproducibility, install this repo and all of its dev dependencies with Poetry. curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python -2. Running precommit testsMake sure you have an up-to-date local installation of Python (e.g. by running poetry install The precommit tests can now be run via poetry run pytest -m precommitTo only run tests on ResNet50, use poetry run pytest -m resnet503. Publishing on PyPIInstructions can be found in todo_before_release.md and in the Poetry docs on |
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Draft PR for iNNvestigate 2.0 with support for the latest TensorFlow versions (tested on 2.7 and 2.8).
Commits are non-atomic, so this will have to be squash-merged.
Breaking changes
Due to the switch from TF1 to TF2 and therefore also from
kerastotf.keras, this is a breaking release.The following analyzers have temporarily been removed to get a first TF2 release out and will have to be re-implemented:
PatternNetPatternAttributionLRPZIgnoreBiasLRPEpsilonIgnoreBiasRunning local reference tests
This PR includes thorough tests on reference layers and support for local reference tests on VGG, including reference tests of layer-wise relevances.
To run these local tests, generate the data by following the instructions at https://github.com/adrhill/test-data-innvestigate.
Then copy the generated
.hdf5reference files into/tests/references/vgg16and runpytest -m local.