pyspaz is a module for analyzing live cell single molecule tracking data. The package includes localization, tracking, visualization, masking, quality control, and analysis utilities.
As pyspaz is still in active development, the recommended means of installation is
python setup.py develop
which will track changes in the source files.
pyspaz requires the nd2reader, tifffile, and munkres packages.
For an example of how to run a basic localization and tracking analysis, see the examples/localization_and_tracking.ipynb notebook.