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setup.py
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setup.py
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#!/usr/bin/env python
from setuptools import setup, Extension
import glob
#install_requires=[ "pbcore >= 0.6.3", "networkx >= 1.7" ]
install_requires=[ "networkx >= 1.7" ]
scripts = glob.glob("src/py_scripts/*.py")
setup(name='falcon_kit',
version='0.3.0',
description='a small toolkit for DNA seqeucne alignment, overlapping, and assembly',
author='Jason Chin',
author_email='jchin@pacificbiosciences.com',
packages=['falcon_kit',
'falcon_kit.mains',
'falcon_kit.util',
],
package_dir={'falcon_kit':'src/py/'},
ext_modules=[
Extension('falcon_kit.ext_falcon', ['src/c/ext_falcon.c', 'src/c/DW_banded.c', 'src/c/kmer_lookup.c', 'src/c/falcon.c'],
extra_link_args=["-fPIC", "-O3"]),
],
scripts = scripts,
zip_safe = False,
install_requires=install_requires
)