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It would be useful that the tool does a check for the number of required parameters (those prior to the list of input VCFs), and give a clear error message when not all the expected parameters are provided.
It would be useful that the tool does a check for the number of required parameters (those prior to the list of input VCFs), and give a clear error message when not all the expected parameters are provided.
For example, running the following:
where the 'positions to include' parameter is missing, gives the following error:
which for a novice command line/java user would not be clear what the issue would be.
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