- Update read.Genepop to increase file reading speed (~40 times faster)
- Update read.Structure to increase file reading speed (~90 times faster)
- read.Structure now also can handle triploid and tetraploid organisms (see arg. ploidy)
- fix bug in allele.reduce to handle small p threshold across all loci
Assets
2
- Add codes to check model name in assign.MC, assign.kfold, assign.X
- Add text to SVM description
- Fix cbind/stringsAsFactors issues in several places for R 4.0
- Able to inject arugments used in models (e.g., gamma in SVM)
Assets
2
- Fix input non-genetic data (x1) error in assign.X
Assets
2
- Update following functions to work with R 4.0.0
accuracy.MC, accuracy.kfold, assign.matrix, compile.data, membership.plot - Add stringsAsFactor=T to read.table and read.csv
- Temporarily turn off testthat due to its current failure to pass test in Debian system
Assets
2
- add broken-stick method for principal component selection in assign.MC, assign.kfold, and assign.X functions
- update accuracy.MC, accuracy.kfold, assign.matrix to handle missing levels of predicted population in test results
- update assign. and accuracy. functions to handle numeric population names
Assets
2
Fix parallel computing issue in the function assign.kfold.
Assets
2
Update assign.MC & assign.kfold to detect pop size and train.inds/k.fold setting
Update accuracy.MC & assign.matrix to handle test individuals not from every pop
Slightly modify levels method in accuracy.kfold
fix bugs in accuracy.plot for K-fold results
fix membership.plot title positioning and set text size to default
Assets
2
Include testthat for assign.matrix; Fix word break issues in read.Genepop and membership.plot; Update citation