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Add GTF input to sce file generation #38

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jashapiro opened this issue Sep 27, 2021 · 0 comments · Fixed by #42
Closed

Add GTF input to sce file generation #38

jashapiro opened this issue Sep 27, 2021 · 0 comments · Fixed by #42

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@jashapiro
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When scpcaTools supports adding gene symbols to the output files(AlexsLemonade/scpcaTools#35), it will need a GTF file as input.

This issue is to track adding that support/input to the workflow and associated scripts, reading the GTF file location from the workflow parameters.
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Add gene_symbols to SCE objects AlexsLemonade/scpca-nf
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@jashapiro