【Bug】The built-in Louvain algorithm can only run on graphs where the OID are integers #3545
Comments
yyg192
changed the title
yyg192
changed the title
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Perhaps the int version is shipped with precompiled library, but the string version needs compilation on the fly. But the cmake has some error. What's the arrow version, and how do u installed that? |
Thank's for your response
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1.3 有点太低了，现在已经 15.0 了 😿 能否升级一下呢，至少是6以上我记得 |
My arrow version is 1.3.0 and pyarrow version is 15.0.0. It seems that both of them are almost the latest versions. |
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1.3 怎么会是最新的呢。如何安装的 c++ 的 arrow |
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哦哦，好的，我们也尝试用 pyarrow 15 试一下看看 |
我发现pyarrow版本可能过高的动机是，你们发布的docker镜像（registry.cn-hongkong.aliyuncs.com/graphscope/graphscope-dev:latest），里面的pyarrow版本是14.0.1，所以我抱着将信将疑的态度尝试了一下，结果很神奇的解决了。 |
哥你好，我反馈一下最新问题。 我在vm虚拟机上新装了一个ubuntu20.04，在anaconda环境下用pip install graphscope==0.26.0，然后装了一个jdk11。 然后我重新装了一个ubuntu 22.04。然后在非anaconda环境下，pip install graphscope==0.26.0，然后装了一个jdk11，然后apt-get install cmake==3.22.1。然后问题解决了。 以上是我这周来回倒腾的坑，希望对您有帮助，另外环境问题感觉踩了挺多坑，graphscope项目组可以再多做一些基本测试。 |
platform
ubuntu 20.04
jdk 11.0.21
python 3.8.13
gcc 9.4.0
graphscope==0.26.0
standalone mode
Here's the code that can run correctly
"""
以下是可以运行的代码,只需要将上面不可运行的代码中的节点oid设置为 整型 即可
"""
"""
以下是可以运行的代码,只需要将上面不可运行的代码中的节点vid设置为 整型 即可
"""
import numpy as np
import pandas as pd
import os
import graphscope as gs
gs.set_option(show_log=False)
leader_id = [0, 0, 0, 1, 1, 3, 3, 6, 6, 6, 7, 7, 8]
member_id = [2, 3, 4, 5, 6, 6, 8, 0, 2, 8, 8, 9, 9]
group_size = [4, 4, 4, 3, 3, 3, 3, 3, 3, 3, 3, 3, 2]
edges_df = pd.DataFrame({"leader_id":leader_id, "member_id":member_id, "group_size":group_size})
student_id = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9]
vertices_df = pd.DataFrame({"student_id":student_id})
sess = gs.session(cluster_type='hosts')
gs_graph = sess.g(oid_type='int64_t', directed=False, generate_eid=False)
gs_graph = gs_graph.add_vertices(vertices_df, label="id", properties=[]).add_edges(edges_df, label="leader-member", src_label="id", dst_label="id", properties=["group_size"])
louvain_contxt = gs.louvain(gs_graph)
result_df = louvain_contxt.to_dataframe(
selector={"id": "v.id", "result": "r"}
)
print(result_df)
The following code is unable to run (as the OID are of string type):
"""
下面是无法运行的代码,无法运行的原因是因为顶点oid为string
"""
import numpy as np
import pandas as pd
import os
import graphscope as gs
gs.set_option(show_log=False)
leader_id = ["0","0","0","1","1","3","3","6","6","6","7","7","8"]
member_id = ["2","3","4","5","6","6","8","0","2","8","8","9","9"]
group_size = [4, 4, 4, 3, 3, 3, 3, 3, 3, 3, 3, 3, 2]
edges_df = pd.DataFrame({"leader_id":leader_id, "member_id":member_id, "group_size":group_size})
student_id = ["0", "1", "2", "3", "4", "5", "6", "7", "8", "9"]
vertices_df = pd.DataFrame({"student_id":student_id})
sess = gs.session(cluster_type='hosts')
gs_graph = sess.g(oid_type='string', directed=False, generate_eid=False)
gs_graph = gs_graph.add_vertices(vertices_df, label="id", properties=[]).add_edges(edges_df, label="leader-member", src_label="id", dst_label="id", properties=["group_size"])
louvain_contxt = gs.louvain(gs_graph)
result_df = louvain_contxt.to_dataframe(
selector={"id": "v.id", "result": "r"}
)
print(result_df)
bug information
Failed to run command: cmake . -DNETWORKX=ON -DENABLE_JAVA_SDK=OFF -DCMAKE_PREFIX_PATH='/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime;/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/openmpi' -DPROJECT_FRAME=ON, error message is: CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findlz4Alt.cmake:29 (find_package):
By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "lz4", but
CMake did not find one.
Could not find a package configuration file provided by "lz4" with any of
the following names:
Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR"
to a directory containing one of the above files. If "lz4" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:206 (find_package)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:313 (arrow_find_package_cmake_package_configuration)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:350 (arrow_find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindzstdAlt.cmake:29 (find_package):
By not providing "Findzstd.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "zstd", but
CMake did not find one.
Could not find a package configuration file provided by "zstd" with any of
the following names:
Add the installation prefix of "zstd" to CMAKE_PREFIX_PATH or set
"zstd_DIR" to a directory containing one of the above files. If "zstd"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:206 (find_package)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:313 (arrow_find_package_cmake_package_configuration)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:350 (arrow_find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findre2Alt.cmake:29 (find_package):
By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "re2", but
CMake did not find one.
Could not find a package configuration file provided by "re2" with any of
the following names:
Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR"
to a directory containing one of the above files. If "re2" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:206 (find_package)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:313 (arrow_find_package_cmake_package_configuration)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:350 (arrow_find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindBrotliAlt.cmake:153 (add_library):
add_library cannot create imported target "Brotli::brotlicommon" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindBrotliAlt.cmake:157 (add_library):
add_library cannot create imported target "Brotli::brotlienc" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindBrotliAlt.cmake:161 (add_library):
add_library cannot create imported target "Brotli::brotlidec" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
2024-02-18 10:55:32,281 [ERROR][rpc:188]: Runstep failed with code: ANALYTICAL_ENGINE_INTERNAL_ERROR, message: Error occurred during RunStep, The traceback is: Traceback (most recent call last):
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/utils.py", line 417, in _compile_on_local
logger.debug(run_command(command, cwd=workdir))
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/utils.py", line 330, in run_command
raise RuntimeError(f"Failed to run command: {args}, err: {err}")
RuntimeError: Failed to run command: cmake . -DNETWORKX=ON -DENABLE_JAVA_SDK=OFF -DCMAKE_PREFIX_PATH='/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime;/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/openmpi' -DPROJECT_FRAME=ON, err: CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findlz4Alt.cmake:29 (find_package):
By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "lz4", but
CMake did not find one.
Could not find a package configuration file provided by "lz4" with any of
the following names:
Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR"
to a directory containing one of the above files. If "lz4" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:206 (find_package)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:313 (arrow_find_package_cmake_package_configuration)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:350 (arrow_find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindzstdAlt.cmake:29 (find_package):
By not providing "Findzstd.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "zstd", but
CMake did not find one.
Could not find a package configuration file provided by "zstd" with any of
the following names:
Add the installation prefix of "zstd" to CMAKE_PREFIX_PATH or set
"zstd_DIR" to a directory containing one of the above files. If "zstd"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:206 (find_package)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:313 (arrow_find_package_cmake_package_configuration)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:350 (arrow_find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findre2Alt.cmake:29 (find_package):
By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "re2", but
CMake did not find one.
Could not find a package configuration file provided by "re2" with any of
the following names:
Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR"
to a directory containing one of the above files. If "re2" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:206 (find_package)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:313 (arrow_find_package_cmake_package_configuration)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:350 (arrow_find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindBrotliAlt.cmake:153 (add_library):
add_library cannot create imported target "Brotli::brotlicommon" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindBrotliAlt.cmake:157 (add_library):
add_library cannot create imported target "Brotli::brotlienc" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindBrotliAlt.cmake:161 (add_library):
add_library cannot create imported target "Brotli::brotlidec" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findlz4Alt.cmake:29 (find_package):
By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "lz4", but
CMake did not find one.
Could not find a package configuration file provided by "lz4" with any of
the following names:
Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR"
to a directory containing one of the above files. If "lz4" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindzstdAlt.cmake:29 (find_package):
By not providing "Findzstd.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "zstd", but
CMake did not find one.
Could not find a package configuration file provided by "zstd" with any of
the following names:
Add the installation prefix of "zstd" to CMAKE_PREFIX_PATH or set
"zstd_DIR" to a directory containing one of the above files. If "zstd"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindzstdAlt.cmake:132 (add_library):
add_library cannot create imported target "zstd::libzstd_shared" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findre2Alt.cmake:29 (find_package):
By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "re2", but
CMake did not find one.
Could not find a package configuration file provided by "re2" with any of
the following names:
Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR"
to a directory containing one of the above files. If "re2" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findutf8proc.cmake:114 (add_library):
add_library cannot create imported target "utf8proc::utf8proc" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/servicer/graphscope_one/service.py", line 245, in _RunStep
head, bodies = self._operation_executor.run_on_analytical_engine(
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/monitor.py", line 191, in runOnAnalyticalEngineWarp
res = func(instance, dag_def, dag_bodies, loader_op_bodies)
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/op_executor.py", line 176, in run_on_analytical_engine
dag_def, dag_bodies = self.pre_process(dag_def, dag_bodies, loader_op_bodies)
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/op_executor.py", line 168, in pre_process
op = self._maybe_register_graph(op)
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/op_executor.py", line 293, in _maybe_register_graph
compiled_path = self._compile_lib_and_distribute(
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/op_executor.py", line 409, in _compile_lib_and_distribute
lib_path, java_jar_path, java_ffi_path, app_type = compile_func(
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/utils.py", line 681, in compile_graph_frame
lib_path = compile_library(commands, library_dir, library_name, launcher)
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/utils.py", line 371, in compile_library
return _compile_on_local(commands, workdir, output_name)
File "/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/gscoordinator/utils.py", line 424, in _compile_on_local
raise CompilationError(
graphscope.framework.errors.CompilationError: Failed to compile 9170236ae051c913cc0197c0b09970571cb88a9327d305444ed0c62800ff73fd on platform system: Linux
machine: x86_64
platform: Linux-5.15.0-94-generic-x86_64-with-glibc2.17
uname: uname_result(system='Linux', node='yangyugang-virtual-machine', release='5.15.0-94-generic', version='#104
20.04.1-Ubuntu SMP Tue Jan 16 13:34:09 UTC 2024', machine='x86_64', processor='x86_64')20.04.1-Ubuntu SMP Tue Jan 16 13:34:09 UTC 2024kernel_ver: #104
mac_ver: ('', ('', '', ''), '')
gcc_ver: b'gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0\nCopyright (C) 2019 Free Software Foundation, Inc.\nThis is free software; see the source for copying conditions. There is NO\nwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.\n\n'
python_ver: 3.8.13
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findlz4Alt.cmake:29 (find_package):
By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "lz4", but
CMake did not find one.
Could not find a package configuration file provided by "lz4" with any of
the following names:
Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR"
to a directory containing one of the above files. If "lz4" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindzstdAlt.cmake:29 (find_package):
By not providing "Findzstd.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "zstd", but
CMake did not find one.
Could not find a package configuration file provided by "zstd" with any of
the following names:
Add the installation prefix of "zstd" to CMAKE_PREFIX_PATH or set
"zstd_DIR" to a directory containing one of the above files. If "zstd"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/FindzstdAlt.cmake:132 (add_library):
add_library cannot create imported target "zstd::libzstd_shared" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Warning at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findre2Alt.cmake:29 (find_package):
By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "re2", but
CMake did not find one.
Could not find a package configuration file provided by "re2" with any of
the following names:
Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR"
to a directory containing one of the above files. If "re2" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Arrow/Findutf8proc.cmake:114 (add_library):
add_library cannot create imported target "utf8proc::utf8proc" because
another target with the same name already exists.
Call Stack (most recent call first):
/usr/share/cmake-3.16/Modules/CMakeFindDependencyMacro.cmake:47 (find_package)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:109 (find_dependency)
/usr/lib/x86_64-linux-gnu/cmake/Arrow/ArrowConfig.cmake:132 (arrow_find_dependencies)
/home/yangyugang/anaconda3/envs/graphscope_env/lib/python3.8/site-packages/graphscope.runtime/lib/cmake/graphscope-analytical/cmake/FindArrow.cmake:386 (find_package)
CMakeLists.txt:242 (include)
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