.. module:: anhima
.. moduleauthor:: Alistair Miles <alimanfoo@googlemail.com>
N.B., this package is in a very early stage of development. Please report any bugs to the GitHub issue tracker.
Please note that this package is mostly an extremely thin wrapper around :mod:`numpy`, :mod:`scipy`, :mod:`numexpr`, :mod:`matplotlib`, :mod:`sklearn` and other generic scientific libraries. This package is intended to provide convenience for those working with genetic variation data who need quick access to some simple analysis and plotting functions. Viewing the source code is recommended, as this may suggest ways that generic libraries like :mod:`numpy` could be used or adapted for other purposes beyond the limited set of functionalities supported here.
- Documentation: http://anhima.readthedocs.org
- Examples: http://nbviewer.ipython.org/github/alimanfoo/anhima/tree/master/examples/
- Source: http://github.com/alimanfoo/anhima
Installation
Install from GitHub:
git clone https://github.com/alimanfoo/anhima.git cd anhima python setup.py install
Contents
.. toctree:: :maxdepth: 2 loc gt af ld dist pca mds tree ped h5 sim
Indices and tables