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@malariagen @wtchg-kwiatkowski @zarr-developers
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  1. zarr-developers/zarr-python zarr-developers/zarr-python Public

    An implementation of chunked, compressed, N-dimensional arrays for Python.

    Python 1.3k 255

  2. cggh/scikit-allel cggh/scikit-allel Public

    A Python package for exploring and analysing genetic variation data

    Jupyter Notebook 272 49

  3. petl-developers/petl petl-developers/petl Public

    Python Extract Transform and Load Tables of Data

    Python 1.2k 189

  4. pysamstats pysamstats Public

    A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

    Python 184 43

  5. zarr-developers/numcodecs zarr-developers/numcodecs Public

    A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

    Python 117 77

  6. wtchg-kwiatkowski/pfx-paper-2015 wtchg-kwiatkowski/pfx-paper-2015 Public

    Code and supplementary information for the 2015 P. falciparum genetic crosses paper

    Jupyter Notebook 1 1