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@malariagen @wtchg-kwiatkowski

Pinned repositories

  1. zarr

    An implementation of chunked, compressed, N-dimensional arrays for Python.

    Jupyter Notebook 60 11

  2. cggh/scikit-allel

    A Python package for exploring and analysing genetic variation data

    Jupyter Notebook 34 4

  3. petl

    Python Extract Transform and Load Tables of Data

    Python 369 83

  4. pysamstats

    A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

    Python 34 18

  5. vcfnp

    Load numpy arrays and HDF5 files from VCF (variant call format)

    Python 23 11

  6. numcodecs

    A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

    Python 7 2

1,323 contributions in the last year

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Contribution activity First pull request First issue First repository Joined GitHub

February 2017

Created a pull request in conda-forge/pytables-feedstock that received 6 comments

Rerender to get numpy 1.12 build

This PR rerenders the feedstock and bumps the build to get builds against numpy 1.12 (which I need for another recipe, see conda-forge/staged-recip…

Created an issue in alimanfoo/numcodecs that received 2 comments

Review AsType tests

Recent PR (#12) has migrated the AsType filter from Zarr. Initial tests look good but it would be good to review prior to next release.

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