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@malariagen @wtchg-kwiatkowski @zarr-developers

Pinned repositories

  1. zarr-developers/zarr

    An implementation of chunked, compressed, N-dimensional arrays for Python.

    Jupyter Notebook 228 39

  2. cggh/scikit-allel

    A Python package for exploring and analysing genetic variation data

    Jupyter Notebook 88 15

  3. petl-developers/petl

    Python Extract Transform and Load Tables of Data

    Python 560 112

  4. pysamstats

    A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

    Python 75 29

  5. zarr-developers/numcodecs

    A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

    Python 16 11

  6. wtchg-kwiatkowski/pfx-paper-2015

    Code and supplementary information for the 2015 P. falciparum genetic crosses paper

    Jupyter Notebook 1

1,220 contributions in the last year

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Contribution activity

November 2018

Created a pull request in zarr-developers/zarr that received 7 comments

Rework requirements for

This PR reworks the requirements to allow for automated management via the PyUP bot. Changes include: All indirect requirements have been removed …

+52 −87 7 comments

Created an issue in zarr-developers/zarr that received 4 comments

Concurrent writes to the same chunk using DirectoryStore

Currently, DirectoryStore (and sub-classes) implement a form of atomic write, which means that when a key/value is being set (e.g., data for a chun…


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