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@malariagen @wtchg-kwiatkowski @zarr-developers

Pinned

  1. An implementation of chunked, compressed, N-dimensional arrays for Python.

    Python 645 108

  2. A Python package for exploring and analysing genetic variation data

    Jupyter Notebook 194 39

  3. Python Extract Transform and Load Tables of Data

    Python 841 150

  4. A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

    Python 115 40

  5. A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

    Python 51 32

  6. Code and supplementary information for the 2015 P. falciparum genetic crosses paper

    Jupyter Notebook 1 1

607 contributions in the last year

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Contribution activity

February 2021

Created a pull request in malariagen/malariagen-data-python that received 3 comments

Variant effects prototyping

Just for visibility, this PR surfaces a branch with prototyping work to add support for computing variant effects.

+10,815 −124 3 comments
Opened 6 other pull requests in 4 repositories
malariagen/vector-data
2 merged
malariagen/malariagen-data-python
2 merged
alimanfoo/dphil
1 merged
malariagen/malvecbib
1 merged
Reviewed 1 pull request in 1 repository
Started 1 discussion in 1 repository
pystatgen/sgkit

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