loc.rst

.. module:: anhima.loc

.. moduleauthor:: Alistair Miles <alimanfoo@googlemail.com>

Locating samples, variants and genome positions

Utility functions for extracting data on samples, variants and genome positions.

See also the examples at:

• http://nbviewer.ipython.org/github/alimanfoo/anhima/blob/master/examples/loc.ipynb

.. autofunction:: take_sample

.. autofunction:: take_samples

.. autofunction:: query_variants

.. autofunction:: compress_variants

.. autofunction:: take_variants

.. autofunction:: locate_region

.. autofunction:: take_region

.. autofunction:: plot_variant_locator

.. autofunction:: windowed_variant_counts

.. autofunction:: plot_windowed_variant_counts

.. autofunction:: windowed_variant_density

.. autofunction:: plot_windowed_variant_density

.. autofunction:: windowed_statistic