tomography_preprocessing

this repository has been archived as these programs are to be integrated into RELION from version 4.1

Installation

In a virtual environment

git clone https://github.com/alisterburt/tomo_preprocessing.git
cd tomo_preprocessing
pip install -e .

Programs

Job Type	Program
Import	relion_tomo_import SerialEM
Tilt-series alignment	relion_tomo_align_tilt_series IMOD:fiducials
Tilt-series alignment	relion_tomo_align_tilt_series IMOD:patch-tracking
Tilt-series alignment	relion_tomo_align_tilt_series AreTomo
Denoising (cryoCARE)	relion_tomo_denoise

For CryoCARE denoising, please install this version: https://github.com/EuanPyle/cryoCARE_mpido

A helptext can be found for each program with

<program_name> --help