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Update SHERPA to v2.2.8, import OpenLoops #2072

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merged 6 commits into from
Mar 5, 2020
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mfasDa
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@mfasDa mfasDa commented Feb 12, 2020

  • Upgrade SHERPA to v2.2.8
  • Add new build recipe for OpenLoops
  • Specify Openloops version alice/v2.1.0 (customization
    for out-of-source builds as usually done by ALICE)
  • Add dependency on OpenLoops in SHERPA

- Upgrade SHERPA to v2.2.8
- Add new build recipe for OpenLoops
- Specify Openloops version alice/v2.1.0 (customization
  for out-of-source builds as usually done by ALICE)
- Add dependency on OpenLoops in SHERPA
@mfasDa mfasDa requested review from a team as code owners February 12, 2020 14:30
@ghost ghost requested review from maireiphc and Atlantic777 February 12, 2020 14:30
@ktf
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ktf commented Feb 12, 2020

I created https://github.com/alisw/openloops and made you an admin. Can you move there the code? Thanks.

@mfasDa
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mfasDa commented Feb 12, 2020

@ktf Thanks a lot! I will move the code there. Fork was just a temporary solution. We need our own fork and cannot take the official as without the modifications OpenLoops requires the processes in the build directory, which is in case of ALICE builds different from the install directory.

@mfasDa
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mfasDa commented Feb 13, 2020

Openloops v2.1.0 is now imported as tag v2.1.0-alice1, together with branch alice/v2.1.0 in alisw/openloops. The build recipe is adapted.

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ktf commented Feb 13, 2020

Thanks. I cleaned up stuff for the linker. In particular DYLD_LIBRARY_PATH is useless when SIP is enabled. We might have to do some magic to get proclib to work, but let's first see without anything particular.

@mfasDa
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mfasDa commented Feb 13, 2020

Thanks! For what concerns the SHERPA: There is an official repo https://gitlab.com/sherpa-team/sherpa, and my PR (alisw/SHERPA#2) is nearly an identical clone, however as there is no configure option for disabling the manuals which create compiler errors we need disable it in the makefile ourselves and therefore need our own fork (same issue was there in v2.2.4). After the import of the SHERPA version I would adapt the build recipe for SHERPA to use the tag from the alisw fork, and the PR should be good to go.

maireiphc
maireiphc previously approved these changes Feb 14, 2020
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Ok, let's give it a build try !

- GMP needed as build dependency introduced by
  fastjet
- Several dependencies in the modulefile were
  misspelled, consequently the module was not
  loaded.
@mfasDa mfasDa changed the title [WIP] Update SHERPA to v2.2.8, import OpenLoops Update SHERPA to v2.2.8, import OpenLoops Mar 3, 2020
@lcunquei
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lcunquei commented Mar 3, 2020

Hi, I have looked at the jet spectrum and it seems ok

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ktf commented Mar 3, 2020

@maireiphc up to you to approve.

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mfasDa commented Mar 5, 2020

Before merging I would suggest to create the branch and tag in the ALICE SHERPA fork and adapt the build recipe once more to use the tag from the ALICE fork.

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Sorry was offline for a national meeting. Now approved.

tag: "v2.2.4-alice1"
source: https://github.com/alisw/SHERPA
tag: "v2.2.8-alice1"
source: https://github.com/mfasDa/SHERPA
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The intent is likely to change this l.4 before the actual merging, to pick-up the tag v2.2.8-alice1
from https://github.com/alisw/SHERPA and not from Markus' fork used for development
See the parallel alisw/SHERPA#2 where we are about to create new branch v2.2.8 and then tag v2.2.8-alice1 for alisw/SHERPA

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Of course, my own fork was just a temporary solution for the testing phase.

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mfasDa commented Mar 5, 2020

When merging the PR please squash-merge the commit (if possible keeping only the commit message of the first commit).

@ktf ktf merged commit 9a4eb74 into alisw:master Mar 5, 2020
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qgp commented Mar 5, 2020

@mfasDa @ktf This was merged with Markus' personal repo for sherpa, should still be changed to alisw, I guess.

maireiphc added a commit that referenced this pull request Mar 6, 2020
For the official test, we switch from @mfasDa development repo to our official alisw repo.
. The tag v2.2.8-alice1 has just been done : https://github.com/alisw/SHERPA/tree/v2.2.8-alice1
. See initial PR for details : #2072
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  1. The tag v2.2.8-alice1 of the branch under alisw/SHERPA is done.
  2. A PR is issued for the alidist recipe (to pick alisw/SHERPA instead of @mfasDa)

ktf pushed a commit that referenced this pull request Mar 6, 2020
For the official test, we switch from @mfasDa development repo to our official alisw repo.
. The tag v2.2.8-alice1 has just been done : https://github.com/alisw/SHERPA/tree/v2.2.8-alice1
. See initial PR for details : #2072
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maireiphc commented Mar 9, 2020

Hi @mfasDa

can you inspect the daily build outcome : it seems to fail on OpenLoops compilation :
DEBUG:AliGenerators:Openloops:34923a30: scons: done building targets.
DEBUG:AliGenerators:Openloops:34923a30: ++ JOBS=3
DEBUG:AliGenerators:Openloops:34923a30: ++ [[ 3 -gt 0 ]]
DEBUG:AliGenerators:Openloops:34923a30: ++ PROCESSES=(ppjj ppjj_ew ppjjj ppjjj_ew ppjjj_nf5 ppjjjj)
DEBUG:AliGenerators:Openloops:34923a30: ++ for proc in '${PROCESSES[@]}'
DEBUG:AliGenerators:Openloops:34923a30: ++ ./scons --jobs=3 auto=ppjj
DEBUG:AliGenerators:Openloops:34923a30: scons: Reading SConscript files ...
DEBUG:AliGenerators:Openloops:34923a30:
DEBUG:AliGenerators:Openloops:34923a30: >>> OpenLoops Process Downloader <<<
DEBUG:AliGenerators:Openloops:34923a30:
DEBUG:AliGenerators:Openloops:34923a30: Warning: Channel database update for repository public failed (<urlopen error [Errno -2] Name or service not known>). Skip this repository.
DEBUG:AliGenerators:Openloops:34923a30: - process: ppjj ... ERROR: not available (installed: {})
DEBUG:AliGenerators:Openloops:34923a30: ERROR: process downloader failed.
DEBUG:AliGenerators:Openloops:34923a30:
ERROR:AliGenerators:Openloops:34923a30: Error while executing /build/workarea/sw/20156109/1/SPECS/slc6_x86-64/Openloops/v2.1.0-alice1-1/build.sh on alibuild10.cern.ch'.`

See Daily build console output, yesterday and 2-days ago :
. https://alijenkins.cern.ch/job/DailyBuilds/job/DailyAliGenerators/214/console
. https://alijenkins.cern.ch/job/DailyBuilds/job/DailyAliGenerators/216/console

NB : OpenLoops is build quite soon in the package order

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mfasDa commented Mar 9, 2020

I was able to build openloops over the weekend. The problem happens when building the process libraries, which is something handled by openloops internally. Maybe just a temporary network glitch - could you try to test building aligenerators again?

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To my knowledge, I do not have an hand on this test build. LIkely sthg for @ktf...

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Hello all,

today daily tag failed due to a similar reason at the OpenLoop compilation level :
https://alijenkins.cern.ch/job/DailyBuilds/job/DailyAliGenerators/217/console

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Hi Markus, all,

Just to add that I have test-compiled AliGenerators last week (on SL7) and it worked there.

Do we/you happen to know which file it is trying to download/which server is being contacted? Could it be SL6-specific?

Marco.

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maireiphc commented Mar 10, 2020

I have compiled AliGenerators on my Ubuntu 18.04 LTC this morning after an update of alidist.

aliBuild build AliGenerators --debug --defaults generators

OpenLoops took super long to be through (>1h30) but in the end, it went compiled.
The NLO processes which are here downloaded should be : ppjj ppjj_ew ppjjj ppjjj_ew ppjjj_nf5 ppjjjj if I get things right.
The action seems to happen via : v2.1.0-alice1/pyol/bin/download_process.py
Warning line is l.121

Under /sw/ubuntu1804_x86-64/Openloops/v2.1.0-alice1-1/proclib, one can see this is 1.3G of NLO libs with 1G for the sole ppjjjj_lt (pp to 4 jets ?)
Here on the build it seems to fail on the first process ppjj.

Can't find the exact url behind the scene :
https://openloops.hepforge.org/process_library.php?repo=public&version=2#ppjets

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Hi Antonin,
Ah yes, I also remember that Openloops took a while to 'build'. So that looks like a limitation on the server that stores these libraries. Maybe the build scripts on our build server simply hit a time-out?

The file sizes you list above sound very large, so I had a look at my AliGenerators directory, and indeed openloops is quite large, but so are some other packages (e.g. Herwig, EPOS and even Python-modules are all on the Gb level space wise), so I wouldn't worry about this too much....

The file sizes that I find are as follows:

776K	Openloops/v2.1.0-alice1-1/proclib/channels_public.rinfo
8.0K	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjj_ew_lt.info
33M	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjj_ew_lt.so
8.0K	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjj_ew_lt.info
222M	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjj_ew_lt.so
8.0K	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjjj_lt.info
1004M	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjjj_lt.so
4.0K	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjj_lt.info
36M	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjj_lt.so
4.0K	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjj_nf5_lt.info
32M	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjjj_nf5_lt.so
4.0K	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjj_lt.info
3.4M	Openloops/v2.1.0-alice1-1/proclib/libopenloops_ppjj_lt.so

The URL that it is trying to acceess is something like:

repository_url = (config['remote_process_url'] +
                  '/%s/processes/' +  str(local_api_version))

and the config['remote_process_url'] is:
http://www.physik.uzh.ch/data/openloops/repositories
which is not browsable.
local_api_version is 2 in our case

I don't know exactly what comes out of the subsequent code; in particular how the %s is filled. There is no obvious dependence on system version, though.

@mfasDa
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mfasDa commented Mar 11, 2020

Hi @marcovanleeuwen , Hi @maireiphc ,

The whole repository of the openloops processes is 15 GB. We have to select only the most fundamental processes. I have limited for the moment to pp->JJ(x), in case EW processes are desired they need to be added.

For what concerns the compile time I had to reduce the number of CPUs for the process library builds because memory consumption was too high.

The openloops package handler is unfortunately not very flexible and I am not sure we should hack it. The process libraries are however essential in order to be able to calculate at NLO.

Cheers

Markus

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Hi @mfasDa @ktf

OK, I see. Looking again at the logs, I notice that it says:

DEBUG:AliGenerators:Openloops:34923a30: Warning: Channel database update for repository public failed (<urlopen error [Errno -2] Name or service not known>). Skip this repository.
DEBUG:AliGenerators:Openloops:34923a30: - process: ppjj ... ERROR: not available (installed: {})
DEBUG:AliGenerators:Openloops:34923a30: ERROR: process downloader failed.

which does suggest that it cannot reach the repository.

@ktf, are there any restrictions on where the build hosts can download files from? The openloops scripts need to access pages on this domain: https://www.physik.uzh.ch/data/openloops/repositories
to download the 'process libraries'. Are they accessible from the build system?

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maireiphc commented Mar 17, 2020

Look, what about disabling Sherpa for a few days from AliGenerators ?
Just to at least validate the fact the Herwig+Fastjet (libGMP) is cured on the other front and then once, we have at least one AliGenerator deployed on cvmfs, we come back to test this OpenLoop+Sherpa front ?
The build of today is still prevented by : OpenLoops download
https://alijenkins.cern.ch/job/DailyBuilds/job/DailyAliGenerators/225/console

@maireiphc
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Some input for build system admin @ktf (@pzhristov ?) to be tested on dedicated machines.
Below a copy of a mail exchange with OpenLoops authors (Philipp Maierhöfer).


Dear Antonin,

apparently the Problem appears when the script tries to download the file
http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
and throws the error "<urlopen error [Errno -2] Name or service not known>"
This does not look like an OpenLoops-specific problem, but rather that accessing a remote file with Python fails on your machine for some reason.

Please ensure yourself that the internet connection is working.
Is the machine able to resolve the host name www.physik.uzh.ch (run host www.physik.uzh.ch on the command line -- it should return the IP address 130.60.164.18)?
Does accessing the file work with a different program (e.g. try wget, curl, w3m, ...)?

Here is a minimal script that you can use for testing (you might also want to try with a different URL):
"""
import sys
if sys.version_info < (3,0,0):
from urllib2 import urlopen
else:
from urllib.request import urlopen
rfh = urlopen('http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db')
print('success')
"""

Best wishes,
Philipp

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Hello @ktf @pzhristov @maireiphc @marcovanleeuwen @mfasDa and all,

I can reproduce the Openloops issue on my laptop using the following Docker container

# docker pull alisw/slc6-builder

As far as I can tell it is not an internet issue, but something possibly wrong in the python version of the test machine.

Here is the line of reasoning and testing

Start with this piece of python code, which is similar to the one suggested by Openloops authors and put it in mytest.py file

from urllib2 import urlopen, URLError
try:
    rfh = urlopen('http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db')
except (URLError, IOError) as e:
    print('Failed: ' + str(e.reason))
    exit()
print('Success')

You will see in the following tests that this script only fails on the ALICE SLC6 build system.
What is the reason why, I don't know.
All the different systems that I have tested have different python versions.
Perhaps the python version on the ALICE SLC6 build system (``) is buggy?
Any hints from @ktf @pzhristov ?

ALICE SLC6 build system - DOES NOT WORK

The container is the alisw/slc6-builder Docker container

preghenella@RobyThinkPad:~/Downloads$ docker run --rm -it -v $PWD:/home alisw/slc6-builder
/usr/local/bin/entrypoint.sh: line 2: /etc/profile.d/rvm.sh: No such file or directory
[root@e194905e43c4 /]#

Test internet connection and that the URL works

[root@e194905e43c4 /]# wget http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
--2020-03-22 09:24:51--  http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Resolving www.physik.uzh.ch... 130.60.164.18
Connecting to www.physik.uzh.ch|130.60.164.18|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db [following]
--2020-03-22 09:24:51--  https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Connecting to www.physik.uzh.ch|130.60.164.18|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 791061 (773K)
Saving to: “channels.db”

100%[========================================================================================================>] 791,061     2.19M/s   in 0.3s    

2020-03-22 09:24:52 (2.19 MB/s) - “channels.db” saved [791061/791061]

Internet connection works and the URL is reachable.
Test that the python script works

[root@e194905e43c4 home]# python --version
Python 2.7.15
[root@e194905e43c4 home]# python mytest.py
Failed: [Errno -2] Name or service not known

The python script fails.

My computer system (Ubuntu 18.04) - WORKS

Test internet connection and that the URL works

preghenella@RobyThinkPad:~/Downloads$ wget http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
--2020-03-22 10:06:14--  http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Resolving www.physik.uzh.ch (www.physik.uzh.ch)... 130.60.164.18
Connecting to www.physik.uzh.ch (www.physik.uzh.ch)|130.60.164.18|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db [following]
--2020-03-22 10:06:14--  https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Connecting to www.physik.uzh.ch (www.physik.uzh.ch)|130.60.164.18|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 791061 (773K)
Saving to: ‘channels.db.3’

channels.db.3                        100%[====================================================================>] 772.52K  2.23MB/s    in 0.3s    

2020-03-22 10:06:14 (2.23 MB/s) - ‘channels.db.3’ saved [791061/791061]

Internet connection works and the URL is reachable.
Test that the python script works.

preghenella@RobyThinkPad:~/Downloads$ python --version
Python 2.7.17
preghenella@RobyThinkPad:~/Downloads$ python mytest.py 
Success

The python script succeeds.

CERN CC7 base system - WORKS

The container is the cern/cc7-base Docker container

preghenella@RobyThinkPad:~/Downloads$ docker run --rm -it -v $PWD:/home cern/cc7-base
[root@9b4999796087 /]# yum install -y wget

Test internet connection and that the URL works

[root@9b4999796087 /]# wget http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
--2020-03-22 10:10:53--  http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Resolving www.physik.uzh.ch (www.physik.uzh.ch)... 130.60.164.18
Connecting to www.physik.uzh.ch (www.physik.uzh.ch)|130.60.164.18|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db [following]
--2020-03-22 10:10:53--  https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Connecting to www.physik.uzh.ch (www.physik.uzh.ch)|130.60.164.18|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 791061 (773K)
Saving to: 'channels.db'

100%[========================================================================================================>] 791,061     2.25MB/s   in 0.3s   

2020-03-22 10:10:54 (2.25 MB/s) - 'channels.db' saved [791061/791061]

Internet connection works and the URL is reachable.
Test that the python script works.

[root@c16482e02e22 home]# python --version
Python 2.7.5
[root@c16482e02e22 home]# python mytest.py
Success

The python script succeeds.

CERN SLC6 base system - WORKS

The container is the cern/slc6-base Docker container

preghenella@RobyThinkPad:~/Downloads$ docker run --rm -it -v $PWD:/home cern/slc6-base
[root@cfa42d7de155 /]# yum install -y wget 

Test internet connection and that the URL works

[root@cfa42d7de155 /]# wget http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
--2020-03-22 10:15:47--  http://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Resolving www.physik.uzh.ch... 130.60.164.18
Connecting to www.physik.uzh.ch|130.60.164.18|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db [following]
--2020-03-22 10:15:47--  https://www.physik.uzh.ch/data/openloops/repositories/public/processes/2/channels.db
Connecting to www.physik.uzh.ch|130.60.164.18|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 791061 (773K)
Saving to: `channels.db'

100%[========================================================================================================>] 791,061     2.25M/s   in 0.3s    

2020-03-22 10:15:48 (2.25 MB/s) - `channels.db' saved [791061/791061]

Internet connection works and the URL is reachable.
Test that the python script works

[root@cfa42d7de155 home]# python --version
Python 2.6.6
[root@cfa42d7de155 home]# python mytest.py
Success

The python script succeeds.

@preghenella
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Hello @ktf, I found the source of the issue above.

I have built the docker container starting from
https://github.com/alisw/docks/tree/master/slc6-builder

If I keep the Dockerfile as it is, I get a system that fails.
I played around and eventually I believe that I managed to single out the part that makes python urllib fail.

If I remove the Parrot configuration lines from the Dockerfile, I get a system that works.
Namely, removing these lines

# Parrot configuration
ENV PARROT_ALLOW_SWITCHING_CVMFS_REPOSITORIES=yes \
    PARROT_CVMFS_REPO=<default-repositories>\ alice-ocdb.cern.ch:url=http://cvmfs-stratum-one.cern.ch/cvmfs/alice-ocdb.cern.ch,pubkey=/etc/cvmfs/keys/cern.ch/cern-it1.cern.ch.pub \
    HTTP_PROXY=DIRECT; \
    PARROT_CVMFS_ALIEN_CACHE=/cvmfs_alien_cache

As a matter of fact, it is only this line that creates the troubles

ENV HTTP_PROXY=DIRECT;

So, I now have a way to screw all the other systems.
It is sufficient also on my machine to screw up python urllib by setting

preghenella@RobyThinkPad:~/Downloads$ export HTTP_PROXY=DIRECT
preghenella@RobyThinkPad:~/Downloads$ python mytest.py 
Failed: [Errno -2] Name or service not known

@preghenella
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to me, the solution for this is unset HTTP_PROXY in the opeloops.sh receipt.
I will open a PR with this fix and see if we actually manage to move forward in the build process.

@preghenella
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The trick works, Openloops is building on Jenkins and has passed the critical point

DEBUG:AliGenerators:Openloops:34923a30: >>> OpenLoops Process Downloader <<<
DEBUG:AliGenerators:Openloops:34923a30: 
DEBUG:AliGenerators:Openloops:34923a30: updated channel database for repository public
DEBUG:AliGenerators:Openloops:34923a30: process API version: 2
DEBUG:AliGenerators:Openloops:34923a30: - process: ppjj ... download from repository: public... extract ... done
DEBUG:AliGenerators:Openloops:34923a30: done
DEBUG:AliGenerators:Openloops:34923a30: 
DEBUG:AliGenerators:Openloops:34923a30: process library: ppjj_lt

Check the full output here.
https://alijenkins.cern.ch/job/DailyBuilds/job/DailyAliGenerators/231/consoleText

@mfasDa mfasDa deleted the feature-sherpa branch March 23, 2020 19:14
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7 participants